RnoEX0070374 @ rn6
Exon Skipping
Gene
ENSRNOG00000037175 | Prss50
Description
serine protease 50 [Source:RGD Symbol;Acc:6499372]
Coordinates
chr8:119139085-119141150:+
Coord C1 exon
chr8:119139085-119139368
Coord A exon
chr8:119140406-119140572
Coord C2 exon
chr8:119140914-119141150
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACTGGGGACATGTCCCACAGGCC
3' ss Score
5.95
5' ss Seq
TATGTGAGG
5' ss Score
2.41
Exon sequences
Seq C1 exon
GAACCGTGTTAACTATACCGTGAGGGTGGGGAGCCCATGGATTAACCAGACCACAGAAACCAGTTCAGATGTGCCAGTAAACCAGGTCATCATAAACAGCGGCTACCAATCCAAGCGGTACTGGTCTTGGGTTGGCCGGATCCATGACATTGGTCTCCTCAAGCTCAAATGGGGGCTCAAGTACAGCAAATACGTGTGGCCTGTCTGCCTGCCTGGCCTGGAGTATGTGGTGGAGGACGGCTCTCTCTGCACTGTGACAGGCTGGGGATACCCCAAGGCTAACG
Seq A exon
GCCTATGGCCCCAGTTCCAAACCCTCCAGGAGAAGGAAGTCTCTATCCTGAACAGCAGGGAGTGTGAGCATTACTACCACAAGTTCTCCAGGATCCACTCTCTGGTTCGGATCATCAGCCCTCAGATGATCTGTGCCTTGGACAACGACAGGGAAAAGTTCTGCTAT
Seq C2 exon
GAGAGGTCTGGTGAGCCCCTGGTCTGCTCTTCAGACGGCATGTGGTACCTGGTAGGAGTGATGAGCTGGGGCCCGGGCTGCAAGAAGAGTGAGGCCCCGCCCATCTTTCTCCAGGTCTCTCACTACCAGCTGTGGATCTGGGACCGCCTTAGTGGGGAGCCCCTGGCCCTTCCGGCGCCATCCAGGACCTTGCTTCTGGGTTTCCTTCTGCTCCTCATCCTTCTGGGCACTCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037175-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
PF0008921=Trypsin=FE(23.0=100)
C2:
PF0008921=Trypsin=PD(18.8=57.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCCAAGCGGTACTGGTC
R:
CCCAGCTCATCACTCCTACCA
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]