BtaEX6095964 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005019 | PRSS50
Description
protease, serine, 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr22:53341509-53343856:+
Coord C1 exon
chr22:53341509-53341792
Coord A exon
chr22:53342982-53343148
Coord C2 exon
chr22:53343626-53343856
Length
167 bp
Sequences
Splice sites
3' ss Seq
GGGGGGCCCCTGTCCCACAGGTC
3' ss Score
8.46
5' ss Seq
TACGTGAGC
5' ss Score
4.3
Exon sequences
Seq C1 exon
GAGTGACGTTACCTATTCAGTACGGGCGGGGAGTCCGTGGATTGACCGGATAACGAAGACTTCCATCGACATCCTGGCAAAAGAGGTCATCGTGCACAGCCGTTATCGAGCCAGTCGGTACTGGTCCTGGGTTGGCCGGGCCAACGACATTGCCCTCCTCAACCTGGATCGGCCAATGCAGTACAGCAAGTATGTCTGGCCCATCTGCCTGCCTGGCTTGGACTATTCGGTGAAGGACTACTCGCTCTGCACTGTGACAGGCTGGGGACTCCCCAGGGTTGATG
Seq A exon
GTCAGTGGCCCCAATTTCGAACCATCCAGGAGAAGGAAGTCACCATCCTGAACAGCACAGAGTGTGACAGCCTCTACCGCAGGTTCTCCAAAATCCCCTCTCTGATTCAGATCATCAACTCCCAGATGATTTGTGCAAAGGACGTCGACAGGGAAAAATTCTGCTAC
Seq C2 exon
GAGATAAGTGGGGAGCCCTTGGCCTGTCCTGTGCAGAACATATGGCACCTGGTGGGAGTGGTGAGCTGGGGCCCAGGCTGCAAGAAGAGCGAGGCTCCGCCTATCTACATCCACATCTCCTCCTACCAACAGTGGATCTGGGACCGCATCAGCGGGCAGACTCTGCCAGCCCCATCCCGGGCCCTGCTCCTGGCACTCCTGATGCTCCTCAGCTTCCTTGCTGCCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005019-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.9=100)
A:
PF0008921=Trypsin=FE(23.1=100)
C2:
PF0008921=Trypsin=PD(18.9=58.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGTGCACAGCCGTTATC
R:
CCCACCAGGTGCCATATGTTC
Band lengths:
254-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]