MmuEX0037455 @ mm9
Exon Skipping
Gene
ENSMUSG00000048752 | Prss50
Description
protease, serine, 50 [Source:MGI Symbol;Acc:MGI:2447303]
Coordinates
chr9:110764766-110767132:+
Coord C1 exon
chr9:110764766-110765049
Coord A exon
chr9:110766234-110766400
Coord C2 exon
chr9:110766785-110767132
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACTGGGGACCTGTCCCACAGGCA
3' ss Score
7.35
5' ss Seq
TATGTAAGG
5' ss Score
4.37
Exon sequences
Seq C1 exon
GAACCATGTTAACTACATAGTGAGGGCGGGGAGCCCGTGGATTAATCAGACGGCAGGAACCAGCTCAGATGTGCCGGTCCATCGAGTCATCATAAACCATGGCTACCAACCCAGACGGTACTGGTCATGGGTTGGCCGGGCCCATGACATCGGCCTTCTCAAGCTCAAGTGGGGGCTCAAGTACAGTAAATACGTGTGGCCCATCTGCCTGCCTGGCCTGGATTACGTGGTGGAGGACAGTTCTCTCTGCACTGTGACAGGCTGGGGATATCCCAGGGCTAACG
Seq A exon
GCATCTGGCCCCAGTTCCAGTCCCTCCAGGAGAAGGAAGTCTCTATCCTGAACAGCAAGAAATGTGATCATTTCTACCACAAGTTCTCCAGAATCTCCTCTCTGGTTCGGATCATCAACCCTCAGATGATCTGTGCCTCGGACAACAACAGGGAGGAGTTCTGCTAT
Seq C2 exon
GAGATAACTGGCGAGCCCCTGGTCTGCTCTTCAGATGGCACATGGTACCTGGTGGGAATGATGAGCTGGGGCCCAGGCTGCAAGAAGAGCGAGGCCCCACCCATCTTTCTGCAGGTCTCCTACTACAGGCCCTGGATCTGGGACCGGCTCAGTGGGGAGCCCCTGGCCCTTCCAGCCCCATCCAGGACCTTGCTCCTGGCTTTCCTTCTGCTCCTCATCCTTCTGGGCACACTGTGACACTGCCATGTCTCTCCTTCCTTCCCCTCCTCCTAAGTGCTGCTGTGGGGGTGGCGCTCAGCCTGCCGGAGGCGGGGAGGAGCTAGCAGAGATTAAACACTTCTTTTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048752_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
PF0008921=Trypsin=FE(23.0=100)
C2:
PF0008921=Trypsin=PD(18.8=57.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGGCCTTCTCAAGCTC
R:
GACCTGCAGAAAGATGGGTGG
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: