BtaINT0118802 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021616 | PRSS57
Description
protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr7:44908667-44909195:-
Coord C1 exon
chr7:44909092-44909195
Coord A exon
chr7:44908821-44909091
Coord C2 exon
chr7:44908667-44908820
Length
271 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCACCCACCCTGCCTGCAGGCT
3' ss Score
8.64
Exon sequences
Seq C1 exon
AGGGACACACCTGCCTGTGACAGCCATGGGGCCTGGGGTGGGGGACTGGGGCCGCCTGCTGCTGACTGTGACCGCTGTCCTGACACTGCCCATGAGGCCCCCAG
Seq A exon
GTGAGGACCCCCAAGTATTCCACCCAAGCCTGCCAGAGGCCCACAGGGACCCACCCAGGAAGCCCCAGCCCCCTGCATGGCTGCTTCTCTCGGGTCGCAGTTTGGGGGCGGGCAAGAGGCCCAGTCCCAGCCCCAGGTTTTAGGGAGTCTGGCTCCCCACTCTGCAAACTCCAGGGTCTTCTCTTTCCATCTCTGTCTCTCCTGCCTCCCCCCAGCCTGACCCCCTCCCCATCCTGCCCCACCCCTGACAGGCCACCCACCCTGCCTGCAG
Seq C2 exon
GCTCCTGGGGGGCACAGATCATTGGGGGCCACGAGGTGACCCCCCACTCCCGGCCCTATATGGCATCCGTGAAGTTCCAGGGCCAGCACCACTGCGGGGGCTTCCTGCTGAGGGCCCGCTGGGTTGTGTCGGCTGCCCACTGCTTCAGCGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021616:ENSBTAT00000039232:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACACACCTGCCTGTG
R:
GTGGGCAGCCGACACAAC
Band lengths:
244-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]