HsaINT0133047 @ hg38
Intron Retention
Gene
ENSG00000185198 | PRSS57
Description
protease, serine 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr19:694814-695498:-
Coord C1 exon
chr19:695352-695498
Coord A exon
chr19:694971-695351
Coord C2 exon
chr19:694814-694970
Length
381 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
GACTCAGGCCGTCCCTCCAGCAG
3' ss Score
3.75
Exon sequences
Seq C1 exon
GGCCGTTGGCTGAGGGTGGGAGCCACGGCCCGAAGACCTCTGCGGGGAGACGCCAGCCTGCGTCTGCCATGGGGCTCGGGTTGAGGGGCTGGGGACGTCCTCTGCTGACTGTGGCCACCGCCCTGATGCTGCCCGTGAAGCCCCCCG
Seq A exon
GTGAGGAGCCCCCCGGGATCCCCACCCAGGCCCCCGCCAAGTCCCCGTACGGGGGCCACACCCGGGAACCCCCAGTCCCGGGAGAACCCTGGGGAGAGCTCCACCTGCTCCATCTGCCGAGCCCCCGTGGCTGCCTCTGCTGGAAATGGATGGAAATCCGGCCGGGGTCTCTGCCCAGCCCAGCCCTGGATCTCCCGGGCTCGGGAGCCCCTCCCAGCGCATCTGGGGGGCTTGTCTGGGCTCTGTCTCCAGCTCTCTGGGTCTCTCCGTCTCTAATCTCACCCCCTGTCTCTGTCTTGGCCGCTACTTCTCCCCCTGCCCTGACCCCAGCCCCGTCATCCGTTCCTCCCGCCTCGTCCCTGACTCAGGCCGTCCCTCCAG
Seq C2 exon
CAGGCTCCTGGGGGGCCCAGATCATCGGGGGCCACGAGGTGACCCCCCACTCCAGGCCCTACATGGCATCCGTGCGCTTCGGGGGCCAACATCACTGCGGAGGCTTCCTGCTGCGAGCCCGCTGGGTGGTCTCGGCCGCCCACTGCTTCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185198:ENST00000613411:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTGGCTGAGGGTGGG
R:
CTGTGGCTGAAGCAGTGGG
Band lengths:
302-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development