GgaINT1001951 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L027]
Coordinates
chr28:1211576-1212697:-
Coord C1 exon
chr28:1211795-1212697
Coord A exon
chr28:1211724-1211794
Coord C2 exon
chr28:1211576-1211723
Length
71 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
CACCACCCCATGTCATGCAGGTG
3' ss Score
5.7
Exon sequences
Seq C1 exon
GCCTGGGCAGAGCTGCCCCGAGAGCCAAAGCACCCAAGGATGGGAAAGAGCAAAGGTCTCTCTAAGCCCATGAGTGTATGAAGTCCCCAATGACTGCTGCCTGCTCCTTATCTCTGTGCTGGCAGAGATCTCTCCCAGCAGCTGACCCCCCCCTTGTGCCCCTTCCAGCAAAGGGCCTTGCGATGATCGCGGCGATGTGCAACGTGCAATCTCTCTGCAGCAGAGCAGACACTTGGCAGAACCACAGAATCAGTCACAGAATCAAAGGGAACTCTGGAGCTCCCCCATCCCCACCTCAAAGCAGTTCCCTACGGCAGCTGCATGGAGTGCTCTGGTAGATGGAAGCCCCGGGGAGCAAAAAGCAGTGCAGCGAAGTGGGACAGCCTGGCAGGAGGGGAAAATGAACGGCTGGGAAGAGCAGTCAGGAAGGAGAGCTTCTAACAGTGCAGGGCTGGGTGGCACAGCCTCCTCTGAGGCTGCAGCTCCCCATGCAAACTGCAGGCTCAGCTGCAGGAGGAAAGCCATCCACGAGCCAGGACGGGGAGAACACAGGTGTGCTGTGCTGCACATCGGGTCCGTGCCCTTTGCACAAAGATTGCTGAGCCGGGGCAGTGCTGCGCTGCTGTCCCACTGATTGCAGCCCCTGAGCACTTGGGCACGTGAGCAGCAGAGATGCAGATAGCCCGGCGGGATGCTGCACTGCTCTGATTAAAGCAATCAGCCCATCGCACATGGTTTCCTGGCTGTAGGGTACAGATGCTCCAAGCTATAAAAGCACCCCTTGGGCAGCAGGAGGGAGGCTCAGAGCTCCGAGCATCCAGCGGGGAGAGGAGATGCGTCGTCCACATTGCCCGCTGCTGCTGGCCCTGCTGCTGCTGCTCTCCTGCCTGCGGGCTGATGGCA
Seq A exon
GTAAGAGAAGGGCTGCCCAGGGCTGCTGCTCTGTGCTCCATCCTGCAGGCTCACCACCCCATGTCATGCAG
Seq C2 exon
GTGCTCTGCGGGGTCAGATCATCGGGGGCCACGAGGCCAAGCCCCACTCCCACCCCTACATGGCGTACCTGAAGTTGAGGATGTCTGCCTGCGGAGGATTCCTGGTGGCCCCTGATTGGGTGATGACGGCCGCACACTGCTTGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013378:ENSGALT00000021823:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.4=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATGCGTCGTCCACATT
R:
GCAGGCAGACATCCTCAACTT
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]