RnoINT0043336 @ rn6
Intron Retention
Gene
ENSRNOG00000020647 | Ctsg
Description
cathepsin G [Source:RGD Symbol;Acc:1307681]
Coordinates
chr15:35112721-35113678:-
Coord C1 exon
chr15:35113491-35113678
Coord A exon
chr15:35112869-35113490
Coord C2 exon
chr15:35112721-35112868
Length
622 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCCCACATGCTTCTTTGCAGGAA
3' ss Score
8.04
Exon sequences
Seq C1 exon
ACGAAACCTATCACGGGAGCAGGGAAATGGACCTGTGGTCCCTCAGCACACCCTTCCTTCCTCTCCAGGGGAGGATAAAAGTCTGGCAGAGAAAAGTAAAAGCAGCAGCTGACTTAGCAACGGTTCTGGAAAGATGCAGCCACTCCTGTTTCTGTTGATCTTTGTTCTATTCCAAGAAGATGAGGCAG
Seq A exon
GTGAGTGGCCAACCATACCTCAGAGATCGGATCCTGTCCTATATACTTAGACATGTTGTAGTAATCCTACTCTGTATTGTTGAGCAAGTTACTTAACTCACATCTCCTCAGTTTCCTTACCTATAAAATGTAGGTTGTATTAATACTGCCTCAGAGAGTTACTACGGCAATTAAATTGGTTAATGTACAAGAGTCTTGTTATTGGCCCTGACACACACAGTAAGTACTTTATAAATATTTTCTACATAAATTTATTCAGCCGTCCATATCTAGTCCCATGTTTTGAGAAGGTAGACTCCGGGCCATGGGATGCTCTCTGAGGAAGGAAGCACCAGGGAACAGAGAAAGCTCACGCTTTGGGAACGCACCTTGCCTCAATAGCCAATCAGCCTCGTATGGAAAAAACATCATTCTCCCTTTGGAGAAAGAGCACACAAGGGTCTGGGAGGGAGATGAGTCTCCCTTCAAGCTAGGAGCCTTGGCATCTTCTCCCTGTGCCTGATGTCCCGCAAAGCTCCTCTGTGTCACCTCCCTCCCCCACATCCAGCCTTTCCAAAACTGCCTACCTGGCACTGTCAGCAAGCTCCCGAGTGTACAGGTAAGCCCACATGCTTCTTTGCAG
Seq C2 exon
GAAAGATCATTGGAGGCCGAGAAGCCAGGCCAAATTCCCACCCCTACATGGCATTTCTTCTGATCCAGAGTCCAGAAGGGCTGAGTGCTTGTGGAGGGTTTCTGGTGCGAGAAGACTTTGTCCTCACAGCAGGTCACTGCTTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020647:ENSRNOT00000059677:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.5=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAACCTATCACGGGAGCA
R:
AGTGACCTGCTGTGAGGACAA
Band lengths:
326-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]