HsaINT0043086 @ hg19
Intron Retention
Gene
ENSG00000100448 | CTSG
Description
cathepsin G [Source:HGNC Symbol;Acc:2532]
Coordinates
chr14:25044471-25045466:-
Coord C1 exon
chr14:25045375-25045466
Coord A exon
chr14:25044619-25045374
Coord C2 exon
chr14:25044471-25044618
Length
756 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGCCAAATGCTTCCTTCCAGGGG
3' ss Score
8.09
Exon sequences
Seq C1 exon
GCACAGCAGCAACTGACTGGGCAGCCTTTCAGGAAAGATGCAGCCACTCCTGCTTCTGCTGGCCTTTCTCCTACCCACTGGGGCTGAGGCAG
Seq A exon
GTGAGTGACCATCCCCACCCTCAGAGGCCTGACCTCATCCCATAGATTCTTGAGCCAAATTGCCTTGGTATATCCTAATTCTGTACTGTTGAGCAAGTTATTTGAATTTGTGTTTCCTCATCTATAAAATGAGAATAATATTAATACCGATCTTGCAGAGTTGCCATGAGAGTTAAATAAGTTAGAGTATTTAAATGTCTTGGAATTGCCCGCACACTATAAGTGCTATAAAAACATGCTTTGTGTAAATAATTTGGCAGCATGTGTCAGACCCTACCTAGGAGGTAAGAATACAGCAATAACAGTACCATCAGCTCATGTCTAGATTTTTAAACACCAGTCCCACGTGGTCTTGAATTGGACTCAGAGGGCTCTGGGAAGCTCCATGAGGATAAAAGTATAAGGGAACTTCAGGAACAATCCTGTACTTACAGCAAAGCATTCTCCTCAATACCTGAGGCTGAAGCTGGCCTTGCCTGGAACAAGGGTTGTTCTCCCTCTTTTGGAGAGGAGGAGGGAGGTGAGGCCTAGGATGGGGAAAAGGGCTCCTTTCAAGACAGCAGTGTTTCCTGTAGAACCCTGGAGCCCCCTCCCAATCTGCTGCCCCATAGACTCCAAGCCTCAGCACCATCTCCTCCCTCTCCTGCACCCTCTCTCCTGCCGTCCCCATCTTCCAGCCTTTCTGGAGCCACCAATCTGGTACCCACATTGCAGGTTCAGCAAGCATAGAGCTAAGTGCCAAATGCTTCCTTCCAG
Seq C2 exon
GGGAGATCATCGGAGGCCGGGAGAGCAGGCCCCACTCCCGCCCCTACATGGCGTATCTTCAGATCCAGAGTCCAGCAGGTCAGAGCAGATGTGGAGGGTTCCTGGTGCGAGAAGACTTTGTGCTGACAGCAGCTCATTGCTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100448-CTSG:NM_001911:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.240
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.6=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGCAGCAACTGACTGG
R:
GCTGTCAGCACAAAGTCTTCT
Band lengths:
222-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)