RnoINT0118827 @ rn6
Intron Retention
Gene
ENSRNOG00000025293 | Prss57
Description
serine protease 57 [Source:RGD Symbol;Acc:1303330]
Coordinates
chr7:12798868-12800617:+
Coord C1 exon
chr7:12798868-12798949
Coord A exon
chr7:12798950-12800463
Coord C2 exon
chr7:12800464-12800617
Length
1514 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TGCTGTACCTACTACCCCAGGTT
3' ss Score
5.93
Exon sequences
Seq C1 exon
ATGGTGCCTGGGACAGGAGGAGGCCGGGACTGCCTGACGCTGGTCGTAGCGACTGCCCTGACCCAGCTCCTGTGGCTCCCTG
Seq A exon
GTGAGAACTCCACATGGCCGTTAGACCCTACCCAAGGTGACCAGGCTTCCAGGACCCGCATGTACTCTAACTGCTGAACCAGGAGGCGTGGGCGGGAGTGCGAGGGGTCCCAGCCACCTCAGGTACAAGGTTGTGGAGTCTTGGTTTCCTTGCTCTTCCGTTCAGTTTTTATTTTTGTGTGTACTAGTAGTTTGCCTGTATGCCTGCGTGCACGCTGTGCCTGGAGCGACCAGCAGGTGGCGTGAGATCCCCCTGGAATTTACAGTTAGTTGGCCCGACCATGTAGGTGCTGGGATCTAAATCCTCAGTAAAACCAGCCAGGGGTTTTAAATAACAGACCGTTTCTCCAAGCCTCCTATTTTTTAAAATTACGTTTATTTATTTCCATTAATTTATTTTGAGAGGGTACATGTCTTGGGTGCTTGATGCAACCAGTGGGAAACTTGCAGGGGTCAATTCTGTCCTTCTACCATATGGGTCTCTGGGATAGAACTTAGGCCATCAAGCTTGGTAGTAATCACCTTCACCTACTGAGCCATCTCACTGGGCCAATGGGTCTCCTGTTCTTGCTCTCTCCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCATCCATCCATGTCTGTCTACCCTATTCATCTCTGTCTGTCTGTCTATCTGTCTGTCTATCCATCCAGTCTTCCCTGTCTGTCTGTCTATCTATCCATCCCTGTCTATCTGTCTATATGTCTATCTTATCTGTCTGTCTGTCTATCTATCTATCCATCCATCCCTGTCTGTCTGTCTATCTTTCTGCCTGCCTGCCTCCCTGTCTTTTTGCTCAAGACGGGTTTCTCTGTGTGGCTCTGGCTGTACTGGAACTCTCTGTAGACCAGGCTGGCCTTGAACTCACAGAGATCCACCTGCCTCTGCCTCCCAAGGACTGGGATTAAAAGATGTGTGCACCATCACCTGACCACTTCCACCTGTTTTAATGAAAGTAGGGTTGCTTGTGGTCCAGGCACCTTGAAATAGCTGTGTAGCTGAAAAGGGAAATGACCCTTAGTTCCTGACCCTCCTGCCTCTGCTTGCAGAGTTCCGAAATAGCATGTGTGCTGGTGCACATCTAGCTTATGGGGTGCTGAGGGTGCCTAGGGCTGTGTGCACCTTGCATGAGTGTTGCATTCTCTGTCTCTGTCTGTCTCTTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACTTACACACATTAGGCAAGGTCTCATCACATAACCCTGGCTGACCCGTAACTCTCCGTGTAGACCAGTTTGATTTTGAACCCACAGAGATCCCCCTGCCTGTTTCCCGGGGGCCTCCCTCTATGTTTACCCCTTCCTCTCAGCCCAGCCTCCACCTCTACTCCCTGCCAGGGCTGTTCTCGATTGGCCTTGATCTACCTATCCTTGCCTCTCACATTGCTGTACCTACTACCCCAG
Seq C2 exon
GTTGCTGCGGATCCCACATTGTTGGAGGCCATGAGGTGAAGCCACATGCCCGGCCCTACATGGCCTCTGTGAACTTCGAGGGCCATCACCATTGTGGAGGCTTCTTGTTCCATGCCCATTGGGTGCTGTCAGCTGCCCATTGCTTCAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025293:ENSRNOT00000038553:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGAGGAGGCCGGGA
R:
CTGTCACTGAAGCAATGGGC
Band lengths:
225-1739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]