BtaINT0118841 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046105 | PRTN3
Description
proteinase 3 [Source:HGNC Symbol;Acc:HGNC:9495]
Coordinates
chr7:44983616-44984484:+
Coord C1 exon
chr7:44983616-44983846
Coord A exon
chr7:44983847-44984202
Coord C2 exon
chr7:44984203-44984484
Length
356 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
ACCAACCTGCCCCTCCACAGGGG
3' ss Score
9.33
Exon sequences
Seq C1 exon
TTGGACCAGCCGGCCACCCTCAACACCCATGTAGCTGTGGCTCAGCTCCCCCAGCAGGCCCAGCCACTGCCCCATGGCACCCAGTGCCTGGCTATGGGCTGGGGCCGCCTGGGCACCCTCGAGCCGCTGCCCCAGGTCCTACAGGAGCTCAATGTCACCGTGGTCACCTTCCTGTGCCGGCCACAGAACGTGTGCACCTACGTGCCCCGACGCAGCGCTGGCATCTGCTTT
Seq A exon
GTAAGTATCGGCGGCTCTGGCGCAGGGACCGCAGGAACCGCCCCAGGAGGGAGGGTGGGAAGCGGGGACCCAGCTCTGCCTTCTCCTTCCTGAGCAGCTGCTGCACCTCCACCTCCCCATCTGGAAGGTGGGCACACAAAGGTGATGTGGCCTTTGTGGGTCTGGGGGCTCATCCATCCAGAGGCCCCTCGAGTGGGTGACCAACTCCCACTCTGTGGCCACACCCATCTCCCTGTCTCACTGGAGTGCCTTCAGTGAGAAGGGGGAGCATTTCACCCCTGCGCGGCCCCTTCCCCAGGCAGCCTCGTCTGGCTGCTGGCCTGGCCTGAGGGATGGACCAACCTGCCCCTCCACAG
Seq C2 exon
GGGGACTCCGGGGGCCCCTTAATCTGTAATGGGGTACTCCATGGCGTGGACTCCTTCGTGATCCGGGGATGTGCCACTGGCCAGTACCCCGACTTCTTTGCTCGCGTCTCCCTCTATGTGGACTGGATCAACTCCGTGCTGAGCAGCGTGGGGGGCAAGGACAGCCCCTGAGGCCCCCAGAACCCCTGCAGGCGCTGTGGACAGAGGCCTGTGTCTGTGTCTGTGCCCCCTCTCCCCCTCCCTGGCAGCCCCACCTGTGCCGTCAATAAAAGCTGAACCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046105:ENSBTAT00000064845:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(35.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTCACCGTGGTCACCTT
R:
TTTATTGACGGCACAGGTGGG
Band lengths:
352-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]