MmuINT0127593 @ mm10
Intron Retention
Gene
ENSMUSG00000057729 | Prtn3
Description
proteinase 3 [Source:MGI Symbol;Acc:MGI:893580]
Coordinates
chr10:79881935-79883174:+
Coord C1 exon
chr10:79881935-79882165
Coord A exon
chr10:79882166-79882817
Coord C2 exon
chr10:79882818-79883174
Length
652 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
TGATCCCTCTTCTACCTCAGGGA
3' ss Score
8.44
Exon sequences
Seq C1 exon
CTAAACCGGACAGCCTCCCTGGGCAAGGAGGTGGCGGTGGCTTCTCTGCCCCAGCAGGACCAGACTCTGTCCCAGGGCACCCAGTGCCTGGCCATGGGCTGGGGTCGCCTGGGCACCCAAGCACCCACGCCCCGTGTGCTGCAGGAACTGAACGTCACGGTGGTCACCTTCCTATGCCGGGAACACAACGTGTGCACGCTGGTGCCACGGAGGGCAGCAGGCATATGCTTC
Seq A exon
GTGAGTACTCAGCTCGGTCGCAGGAGGCGTGGCCTGTGATGGATCCCCATGAAGGGCGGGTCCAAGGGCGAGGCGATTCTTTGGGACGGGGCCTGCGGTGGGGCTGGCTTATGATTCGGTTCCGTGGCCTGTGGGGGAGGGCGAGCCTTATGGAAGGTGGGGGTCATCGGAGGGGCAGATCCCAGCTGACTGTGGGTCCCTAGAAATCTGGATGTCTGGGGTGGAGAGATGGGGATGCCTGGGCTAGAAGGAGGGCTAGTGGGTGACCTGGAGGGTGGGCTCCATGGGCTGGGAGGCGGGCTCTTGGAGGGCAGGGTTTTGCGGAGCCCGGGTTTCGAGGATAAGTGACATCTGAGAAAGTTGGGCATCTGAATATGGCTGCACTGCCTGTCTGTCCCATTCTCACGCATGGTCTGTACCCATCTCCAAGCACCAGTTGTGGCGATCAGCCATCTGTCGACCAGTCCCGGGCCTGTGCAACATATCAGGCATTCCTGTGTACTTGGCACCTTTGTGTGCCTCCCTTTTGGGCCCACTTAGACTGTATCCAACAGGAAGCTAATGAACGCCTCCTGGTCATCCCGTGGGACTCAAATACCCTCATCCTGGCTGACTTCTGTCAGCTTGGGGACTGATCCCTCTTCTACCTCAG
Seq C2 exon
GGAGACTCGGGCGGCCCCTTGATCTGCAATGGCATTCTTCATGGAGTGGACTCCTTCGTGATCCGCGAATGCGCCTCCCTCCAGTTCCCTGATTTCTTCGCCCGGGTGTCCATGTATGTGGACTGGATTCAAAACGTGCTGCGGGGCGCAGAGCCCTGAGGTGCCCTTCTGCGCTCCAGGCAGCCTAAAGCTGGGGCGACCAGCAGGCTCTAGTGGGAAAAAAATGGAGTGGGGTGGACTAGACCTTTCCAGGCTTTTCTTTCACCCACGCACCCACCCACGCAGCACCCCCTGGAGTGGAGTCAGCTCTGTTCCCTATTCCATATGACCTCAATAAAAACTGAGACATATTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057729:ENSMUST00000006679:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(35.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.4=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTTCCTATGCCGGGAA
R:
GTGCGTGGGTGAAAGAAAAGC
Band lengths:
342-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types