GgaINT1001954 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L027]
Coordinates
chr28:1210143-1211067:-
Coord C1 exon
chr28:1210816-1211067
Coord A exon
chr28:1210278-1210815
Coord C2 exon
chr28:1210143-1210277
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCGGTCCCATCTGTCTGCAGGGT
3' ss Score
10.86
Exon sequences
Seq C1 exon
CTGACAGCGAAGGTCAAGCTCAACAAATACGTCCGCACCATTGCGCTGCCCAAAACCAGCAGCGACCTCCCCACGGGCACCTCGTGCACCATAGCAGGATGGGGCCTGATTGATGAGGACGAGAGAACCAGCAAACTCTTCGAAACCGAAGTCTCCATCTACAGCCGCAGAAAATGCATTCTGTTCTACCCACACCTCGACAACGGCATGGTGTGCGCCGGCAGCTTCCATGAGATGAAGGACTCCAGCCAG
Seq A exon
GTATGGCCGCAGAGGGGACACTGCTAGGGGGTTTCCAGGAGAGGTGGTGGCCCATGGAGCACGGCCACCAGGAGCAGGTCTGGCCCTAGGGAAAAGGATGGAGGCAAAGCCATTCCTGTTGGGAAGAGGTGATCCCTTTGGGTAGAGACAAAGCCATTCCGGTTGGGAAGAGATGATCCCGTTGGGTAGGGACAAAGCCATTCCCTCTGGGAAGGGGTGATCCCATTGGGTAGAGGCAAAGCCACTCCCCTTGGGAAGAGGTTCTTATATTGGGTAGAGGCAAAGCCATTCCTGTTGGGAAGAGATGATCCCGTTGGGTAGAGACAAAGCCAATCCTGTTGGGAAGAGGTACTTATATTGGGTAGAGGCAAAGCCATTCCTGTAGGGAAGAGGTGATCCCGTTGGGTAGAGGCAAAGCCACTCCCCCTGGGAAGAGGTAGTTGATCCCGTTGAGAAGAGCAAGGCCATTCCTACTGGGTAGAGGTGAGCCCATTTCTGCTGGGACGAGGCTCCCACCACCGGTCCCATCTGTCTGCAG
Seq C2 exon
GGTGATTCCGGAGGGCCGCTGGTGTGCAATAAGGTAGCACAGGGTGTTGTTTCCTTCGGGTACGACAGCCCGCCTGGTGTCTATGCTCGCATTGCCAACTACCTACCCTGGATCAAGAAAGTCATGAAGAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013378:ENSGALT00000021823:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.5=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCGAAGGTCAAGCTCAA
R:
TAGGTAGTTGGCAATGCGAGC
Band lengths:
355-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]