RnoINT0043339 @ rn6
Intron Retention
Gene
ENSRNOG00000020647 | Ctsg
Description
cathepsin G [Source:RGD Symbol;Acc:1307681]
Coordinates
chr15:35111091-35112021:-
Coord C1 exon
chr15:35111767-35112021
Coord A exon
chr15:35111367-35111766
Coord C2 exon
chr15:35111091-35111366
Length
400 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTCCTTCTCTGCCCACAGGGT
3' ss Score
13.45
Exon sequences
Seq C1 exon
CTGAGGAGTAGAGCCCGGAGGAGTCGAGCGGTGAAGCCCGTGGCTCTGCCTCAAGCCACCAAGAGAGTACAACCAGGGGCTTTGTGCACAGTGGCTGGCTGGGGCCTGGTGAGCCAGCGCAGGGGGACAAATGTACTCCAGGAGGTGAAGCTAAGAGTGCAGACGGACCAAACGTGCGCCAATCGTTTCCAATTCTACAACAGCCAGACTCAGATCTGTGTGGGAAACCCGAGAGAAAGGAAGTCTGCCTTCAAG
Seq A exon
GTAAGAGTGTGAACACCACCAGTAATTTTCTTGGGACAAAGGTCTCAGGGCTGACAGAGGATATAGCAGGGCAGGTCTCCATCACTTCAAGCCTGGGGACTAGAGCAGAGTGAAGAGTTTTTCCTCTTCAGAAATATCAGGAAGGCCCACAATCTACCTTATTGGGGAAGGCGAAGGTACCTTGATGGAGTAAGCTGGAGGCAGTAACTTTAGCAGGATCTGAAGCCAAGCAGCTGAAAGACCCAGGAGCTTGACTCCTGCAAACCCATCAAAAGCCCATCGCCCACACACAGGCAACTAAAGGAAGCCCCCAACCCATACCTTTCTTTGGGAGCCTACATCATAGGGCAGCAAGAGCCAGAAAGCCTAGCTTCACATCCTTTTCCTTCTCTGCCCACAG
Seq C2 exon
GGTGATTCTGGTGGTCCTCTGGTATGTAATAATGTGGCCCAGGGCATCGTCTCCTATGGAAGCAGCAGTGGTAACCCTCCAGCTGTGTTCACCAGAATCCAGAGCTTCATGCCCTGGATCAAAAGAACAATGAGACGTCTTTCCTCAAGGTATTAGGGACTTGCTGACTCCCTGTCTCAGACGTAGACCAGCTTTAGGGAATTTCCATAGCCCTTATTAATGTCTCCTGGACAGTGTAAATTTTCATTTATTAAATATCATTTGGCACTGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020647:ENSRNOT00000059677:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.4=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.8=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGTAGAGCCCGGAG
R:
AACACAGCTGGAGGGTTACCA
Band lengths:
344-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]