HsaINT0043089 @ hg38
Intron Retention
Gene
ENSG00000100448 | CTSG
Description
cathepsin G [Source:HGNC Symbol;Acc:HGNC:2532]
Coordinates
chr14:24573556-24574499:-
Coord C1 exon
chr14:24574245-24574499
Coord A exon
chr14:24573811-24574244
Coord C2 exon
chr14:24573556-24573810
Length
434 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTCTCCTCTCTACCTACAGGGG
3' ss Score
11.91
Exon sequences
Seq C1 exon
CTGAGCAGAAGAGTCAGACGGAATCGAAACGTGAACCCAGTGGCTCTGCCTAGAGCCCAGGAGGGACTGAGACCCGGGACGCTGTGCACTGTGGCCGGCTGGGGCAGGGTCAGCATGAGGAGGGGAACAGATACACTCCGAGAGGTGCAGCTGAGAGTGCAGAGGGATAGGCAGTGCCTCCGCATCTTCGGTTCCTACGACCCCCGAAGGCAGATTTGTGTGGGGGACCGGCGGGAACGGAAGGCTGCCTTCAAG
Seq A exon
GTAAGGCATGGGCATTGGCCAACACACCCCGGGAGAGAGGGGCCCGTGCAGAGCCAGGCAGTGCGAACAGATTCCATCCCCACAGCCTCAGCCTGGCAGCCAGACCAGGGTGGGCTGGGGATTGTTTTCCCCATCAACCTGGTCTCTGGGGGAATAGGAGGAAGACCCACAACACATACATAGGCAACATTCTCCTGGAGAAGGGAGAGGTACCTTGACTCAGATTGGGCTGGAGACAGTAATTAAGGCAGAGCTGAAGTCCAGCGACCGAAAAGATCCAGAGGCTTGGCTCCTGTACCCCACCGATCTTCCATCTCACACACACCCAGCAATTGAAGGGGCCCACCCACCCCTGCCTTCCCTGAGAGCCCGGAGCTCAGGGAAGCAGGAGCAGGGAGGCCTGTCTCAGTCTCCCTTCTCCTCTCTACCTACAG
Seq C2 exon
GGGGATTCCGGAGGCCCCCTGCTGTGTAACAATGTGGCCCACGGCATCGTCTCCTATGGAAAGTCGTCAGGGGTTCCTCCAGAAGTCTTCACCAGGGTCTCAAGTTTCCTGCCCTGGATAAGGACAACAATGAGAAGCTTCAAACTGCTGGATCAGATGGAGACCCCCCTGTGACTGACTCTTCTTCTCGGGGACACAGGCCAGCTCCACAGTGTTGCCAGAGCCTTAATAAACGTCCACAGAGTATAAATAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100448:ENST00000216336:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.9=67.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAAACGTGAACCCAGTGG
R:
TCCAGGGCAGGAAACTTGAGA
Band lengths:
351-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development