HsaINT0043089 @ hg19
Intron Retention
Gene
ENSG00000100448 | CTSG
Description
cathepsin G [Source:HGNC Symbol;Acc:2532]
Coordinates
chr14:25042724-25043705:-
Coord C1 exon
chr14:25043451-25043705
Coord A exon
chr14:25043017-25043450
Coord C2 exon
chr14:25042724-25043016
Length
434 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTCTCCTCTCTACCTACAGGGG
3' ss Score
11.91
Exon sequences
Seq C1 exon
CTGAGCAGAAGAGTCAGACGGAATCGAAACGTGAACCCAGTGGCTCTGCCTAGAGCCCAGGAGGGACTGAGACCCGGGACGCTGTGCACTGTGGCCGGCTGGGGCAGGGTCAGCATGAGGAGGGGAACAGATACACTCCGAGAGGTGCAGCTGAGAGTGCAGAGGGATAGGCAGTGCCTCCGCATCTTCGGTTCCTACGACCCCCGAAGGCAGATTTGTGTGGGGGACCGGCGGGAACGGAAGGCTGCCTTCAAG
Seq A exon
GTAAGGCATGGGCATTGGCCAACACACCCCGGGAGAGAGGGGCCCGTGCAGAGCCAGGCAGTGCGAACAGATTCCATCCCCACAGCCTCAGCCTGGCAGCCAGACCAGGGTGGGCTGGGGATTGTTTTCCCCATCAACCTGGTCTCTGGGGGAATAGGAGGAAGACCCACAACACATACATAGGCAACATTCTCCTGGAGAAGGGAGAGGTACCTTGACTCAGATTGGGCTGGAGACAGTAATTAAGGCAGAGCTGAAGTCCAGCGACCGAAAAGATCCAGAGGCTTGGCTCCTGTACCCCACCGATCTTCCATCTCACACACACCCAGCAATTGAAGGGGCCCACCCACCCCTGCCTTCCCTGAGAGCCCGGAGCTCAGGGAAGCAGGAGCAGGGAGGCCTGTCTCAGTCTCCCTTCTCCTCTCTACCTACAG
Seq C2 exon
GGGGATTCCGGAGGCCCCCTGCTGTGTAACAATGTGGCCCACGGCATCGTCTCCTATGGAAAGTCGTCAGGGGTTCCTCCAGAAGTCTTCACCAGGGTCTCAAGTTTCCTGCCCTGGATAAGGACAACAATGAGAAGCTTCAAACTGCTGGATCAGATGGAGACCCCCCTGTGACTGACTCTTCTTCTCGGGGACACAGGCCAGCTCCACAGTGTTGCCAGAGCCTTAATAAACGTCCACAGAGTATAAATAACCAATTCCTCATTTGTTCATTAAACGTCATTCAGTACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100448-CTSG:NM_001911:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.9=67.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAAACGTGAACCCAGTGG
R:
TCCAGGGCAGGAAACTTGAGA
Band lengths:
351-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)