GgaINT0000086 @ galGal3
Intron Retention
Description
NA
Coordinates
chr28_random:92699-93942:+
Coord C1 exon
chr28_random:92699-92950
Coord A exon
chr28_random:92951-93488
Coord C2 exon
chr28_random:93489-93942
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCGGTCCCATCTGTCTGCAGGGT
3' ss Score
10.86
Exon sequences
Seq C1 exon
CTGACAGCGAAGGTCAAGCTCAACAAATACGTCCGCACCATTGCGCTGCCCAAAACCAGCAGCGACCTCCCCACGGGCACCTCGTGCACCATAGCAGGATGGGGCCTGATTGATGAGGACGAGAGAACCAGCAAACTCTTCGAAACCGAAGTCTCCATCTACAGCCGCAGAAAATGCATTCTGTTCTACCCACACCTCGACAACGGCATGGTGTGCGCCGGCAGCTTCCATGAGATGAAGGACTCCAGCCAG
Seq A exon
GTATGGCCGCAGAGGGGACACTGCTAGGGGGTTTCCAGGAGAGGTGGTGGCCCATGGAGCACGGCCACCAGGAGCAGGTCTGGCCCTAGGGAAAAGGATGGAGGCAAAGCCATTCCTGTTGGGAAGAGGTGATCCCTTTGGGTAGAGACAAAGCCATTCCGGTTGGGAAGAGATGATCCCGTTGGGTAGGGACAAAGCCATTCCCTCTGGGAAGGGGTGATCCCATTGGGTAGAGGCAAAGCCACTCCCCTTGGGAAGAGGTTCTTATATTGGGTAGAGGCAAAGCCATTCCTGTTGGGAAGAGATGATCCCGTTGGGTAGAGACAAAGCCAATCCTGTTGGGAAGAGGTACTTATATTGGGTAGAGGCAAAGCCATTCCTGTAGGGAAGAGGTGATCCCGTTGGGTAGAGGCAAAGCCACTCCCCCTGGGAAGAGGTAGTTGATCCCGTTGAGAAGAGCAAGGCCATTCCTACTGGGTAGAGGTGAGCCCATTTCTGCTGGGACGAGGCTCCCACCACCGGTCCCATCTGTCTGCAG
Seq C2 exon
GGTGATTCCGGAGGGCCGCTGGTGTGCAATAAGGTAGCACAGGGTGTTGTTTCCTTCGGGTACGACAGCCCGCCTGGTGTCTATGCTCGCATTGCCAACTACCTACCCTGGATCAAGAAAGTCATGAAGAAGTAACGGTGCAGCGTCAGCATGGTCCTGGAGACCTGCTGGGTTCCTTCCTGCCCCCACTGATGGCTCCGTTCCCCTCTCTGTCCCTGGGAACCCAAGTGTCCCGATGGATGCCCATAGGGTCCCTCCCTTTGCTCTAAGGCTGTCCCACTGCCAACCCAGCCCAAAAAGCCATCGTGGTGCCACGTTGTCCACCAGCAGAATTTCCGTACGGCACCAGCATGCATTGGCAGTACTGCAGAGCCCGTTTCCCTTGGGCGCCCCCTGCCCCGTTTGAACCTCACTGCACCTGAAACACAGTAAATTCCGAGCTGCGCTCCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013378:ENSGALT00000021823:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.5=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTACCCACACCTCGACA
R:
AGTGGGACAGCCTTAGAGCAA
Band lengths:
352-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]