RnoINT0118830 @ rn6
Intron Retention
Gene
ENSRNOG00000025293 | Prss57
Description
serine protease 57 [Source:RGD Symbol;Acc:1303330]
Coordinates
chr7:12803271-12804283:+
Coord C1 exon
chr7:12803271-12803534
Coord A exon
chr7:12803535-12804091
Coord C2 exon
chr7:12804092-12804283
Length
557 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGA
5' ss Score
7.72
3' ss Seq
TCAAACTTTTTTCACTCCAGGCA
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTGAATGGCTCTGCTGTGCTGGGCCCCGCTGTGAGGCTATTGCGACTGCCTCGGAGAGGAGCTAAGCCTCCCGTGGCGGGCACCCGGTGCCGCGTATCTGGCTGGGGCTCCGTGTCTGACTTTGAGGAGCCTCCACCTGGGCTGATGGAAGTCGAGGTGCGCATACTAGACCTGAGCGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAGTCCTGCCATGCTCTGTACCCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
Seq A exon
GTATGATTCCACGCCACCCTTGTTTACCATATGGGGAAACCGAGGCCCACAGAAGAGGTCAGAGTTGGAAGCAGGCTACCTTTGAGTCCCATTAATGTTGGATTGGACGGAAAAATTGAGGCCCAGGAAAGCGCGGGATGATTGGGAGTCATACAGAGTTACTTTGACTTCTGCAGCCTGTATCCTGCACAAATATGTCCTGGAGGTGTAGGTCTAAACATAGGAGGCATGTCCAGTAGGGGGCGCCAACATTTCTCTCCCAGGCCTGGGCTCATAAAGATGACATAGCAATTTGTACATAGCAATTATGACAGTGAGACAAGTCAGTGAGTTGGGGGTTTTAGGGTGAATACTGAGGAACGCTAAAAGTACAGGCTAGGAGCTGAGACCTAAGGAAAACTTCAGCTTCTTGGGGAGACCTACCAGAGGGCTGTTGCACACAGCTACGTAGGCTGTGCATATGCAAAAACCACAGACCTGTCTGCTTATAAGAGACTCCTTTTGGGGGGACACAAGACCTGAAGAACAATTTTAACCTCAAACTTTTTTCACTCCAG
Seq C2 exon
GCAGACTCTGGGGGGCCCTTGGTCTGTGGAAACAGGGCCCATGGCCTTGTATCTTTCTCAGGCCTCTGGTGTGGTGACCCCAAAACTCCGGATGTCTACACTCAAGTGTCAGCGTTTGTGAGCTGGATCTGGGATGTGGTTCGAGCAAGTCCAACCCCCGGTTCAATGGGATGCTCTTTGAGGGCTGTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025293:ENSRNOT00000038553:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.7=65.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGTGTCTGACTTTGAGG
R:
GCCCTCAAAGAGCATCCCATT
Band lengths:
343-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]