GgaINT0144669 @ galGal3
Intron Retention
Gene
ENSGALG00000001842 | F1NFQ7_CHICK
Description
NA
Coordinates
chr28:2241079-2241438:-
Coord C1 exon
chr28:2241178-2241438
Coord A exon
chr28:2241100-2241177
Coord C2 exon
chr28:2241079-2241099
Length
78 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TAATAAACTCCCCACTGCAGGGT
3' ss Score
6.35
Exon sequences
Seq C1 exon
CTGAACCACACGGCCACGCTGAACGCATTCGTGAAGCGCATCCGCCTGCCCCGGCCACGCATCGACCTGAAACCCGGCACCCTTTGCTCCGTGGTGGGTTGGGGGGACATTTCCAACTACGGCGAGAGGCCCATCCAGCTGATGGAGGCCAACACCACCATCGTCAAGAGGAGTCTGTGTCGGACCCTATGGAAGGGCCGTGTCTCGGGCAACATGCTGTGCGGGGCCAGCCGCAATGCCACGCTGCAGGGCGTCTGTGCG
Seq A exon
GTGAGTGCCACGCGCCCACCCCAACCCTCCCAGCCTCCCCGGCCCGTAGGGCTGCTGTTAATAAACTCCCCACTGCAG
Seq C2 exon
GGTGACTCTGGGGGACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001842:ENSGALT00000002851:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(45.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(3.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACATTTCCAACTACGGC
R:
GGGTCCCCCAGAGTCACC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]