BtaINT0118805 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021616 | PRSS57
Description
protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr7:44904216-44906013:-
Coord C1 exon
chr7:44905750-44906013
Coord A exon
chr7:44904411-44905749
Coord C2 exon
chr7:44904216-44904410
Length
1339 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
ACCTTTGCCTCCACCCTCAGGCG
3' ss Score
9.99
Exon sequences
Seq C1 exon
CTGAACAGCTCTGCCACCCTGGGTCCTGCAGTGGGACTACTGGGGCTGCCGCGGAGGGGCGCCAGGCCTCCCCGGGCCGGGACACGCTGCAAGGTGGCTGGCTGGGGCTCCGTGTCCGACTTCGAGGAACTGCCGCCTGGGCTGATGGAAGCTGAGGTCCGCGTGCTGGAGCTGGACGCCTGCAACAGCTCCTGGAAGGGGCAGCTGAGCCCTGCCATGCTCTGCACCCACAGTGGGGACCGCCGGCGACGTGGCTTCTGCTCG
Seq A exon
GTGAGATGTTCACTCTCAGTCCTGCCTGCTTGCTGTGTAGGGAAACTGAGGCCCTCAGAGAGGTCAGAGCTGGTCAGAGAGCTTGGGCAACTAAGTCCCTGCTCACCTTTAACCAGTTGGTGAGGCCTGGGAAGGGGAGGGAGCCCCCAGGGTCACAGGGCTGCCATGTATGGCTGCATAGGTTGTGCACTGCACAAAGGACTACAGATTTGTGTCTTTAAAAGCAGTGTCCAGATCTCAAGGAAGACGCTTCTGCTCCTAAGCCTTTGTATGGATTAATGGCAAACCTGGGCCTGATGCCCAGGGAGAAACACAGCCCAGACTGGGATCAGGGGAGTGTCTTTTGTTCTAGCCAAAGTGCGTGGTTCAGATTCTAGAGCCCAACTGCCCGGGTCCACATCCAGATGAGCCACTTCTTACACATATGGTTTTGGAAAAGTCATCTCACTTCTCAGGAGCTCACTTTCTCCGTCTGTAAAATGGTCACACCAATAGGACATATTTCTTTGGGTCAGAGCTGATTCCAGGTGAAAATTAGGGTGATAGGTCTGGGGAGAGGAGGAAGCAGGGACTTTAGGGTGAGTATTCAGGAAGGCCTCTCTGAGGACAGTACTTTCGAGACTTGGAGGAGCCTTGAGAATGTCTGAGGGGAGACATGCCAGGCAGACAGACCAGTCACAGGGCTGCTGTGTAGTCGCGCAGGTTGTGCATTGCACAAGGAGCTATAGACTTGTGTGGTATACAAGGAGTGTCCAGCAGGGGGCAGTAATGGGTCTCAAGGATAGGCAAAAGCCTAGAGGTTGGAGCTTGGGCTTTCCAGGTGGCACTTGTGGTAAAGAACCCCCCTGCCAATGCAGGAGATATGAGACGTGGCTTCGATCCCTGAGTCAGGAAGATCCCCTGGAGGAGGGCACAGCAACCCACTTCAGTATTCTTGCCTGGAGAATCTCATGAACAGAGGAGCCTGGAGAGCTATAGTCCATAGGGTTGCAAAGAGTTGGACAAGGCTGAAGCAACTTAGCACACAGAGGTTGGAGCTCAGTTTGCTGCAGAAACAGCTGGCATGTCTGGCTGGAACCAAATGAGTTCGGGGAGAGGAGAGCAGATGAGTGATGGGGGCTGGCTTCTCTAGGCCCTAAAGGCTGAGATGATGTGTTTAGTCTTTGCTCTAAGAGCACTGGGGAGCCATGGTCCCAGCCCAAGCTCTGGGGACTGTCCATGGGACATAAAAGGGTTTTGAGGTAGAGAAGGTCCAGATCAGATCTACATATATTAGCTTCTTTAAGGAAAGTGAGGCCCAGCAAGGGACCCCTGACCTCACCTTTGCCTCCACCCTCAG
Seq C2 exon
GCGGACTCTGGAGGACCCCTGGTATGCAGAAATCGGGCCTATGGCCTCGTCTCCTTCTCTGGCCTCTGGTGTGGGGATCCCAAGACACCCGATGTGTACACACAGGTGTCCGCCTTCGTGACTTGGATCAGGGACGTGATTCGGCATGGCCAGCGTGGCCCCCAGCCCAGGACCACGGGGGGCCGGCAGGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021616:ENSBTAT00000039232:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.246
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.7=64.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCTCTGCCACCCTG
R:
CACATCGGGTGTCTTGGGATC
Band lengths:
358-1697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]