RnoINT0118870 @ rn6
Intron Retention
Gene
ENSRNOG00000029814 | Prtn3
Description
proteinase 3 [Source:RGD Symbol;Acc:1304898]
Coordinates
chr7:12643516-12644639:-
Coord C1 exon
chr7:12644409-12644639
Coord A exon
chr7:12643871-12644408
Coord C2 exon
chr7:12643516-12643870
Length
538 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
CGATCCCTCTTCTACCTCAGGGA
3' ss Score
8.1
Exon sequences
Seq C1 exon
CTAAACCGGCCGGCCTCCCTGGGCAAGCAGGTGGCGGTGGCCTCTCTGCCCCAGCAGGACCAGTCTCTCTCCCAGGGCACCCAATGCCTGGCTATGGGCTGGGGCCGCCTGGGCACCCGAGCGCCCACGCCCCGTGTGCTGCATGAACTGAACGTCACGGTGGTCACCTTCCTGTGCCGAGAACACAACGTGTGCACGCTGGTGCCACGGAGGGCAGCAGGCATTTGCTTC
Seq A exon
GTGAGTACTCAGCTTGCTTGCAGGAGGCATGACCTGTGATGGATCCCATGAGGGGCGGAGCCTCCGGTGGGGCGTTTTCGGTTGGGGTGGTGGCCTGTTGGGGAAGGCGGGCCTTTGGAAAGGTGGGGGACAACGGAGGGACAGATCCCAGGGGACTGTGGATCCCTAGGAATCTGGATGTCTGGGTTGGGGAGATGGGGATGCCTGGGCTAGTGGGAGGGGTTTGCGCCCAGGTGGGTGACCTGGAGTGCGGGCTTCATGGGTTGGGAGGCGGGGCTCTTGGAGGGCAGGGTTGTGTCTCTACCCATCTCCAAGCACCAACTGTGAGGAGGATCAGCCTCGGTGGACCGTCCTGGGCCCCTGCAGCTCTACAGGCGCTCTTTTGTACTTGGCACCTTTGTGTGCCTCCCTTTTGGATCTACTCAGATTGTATCCAACGGGAAGCTAATGAACGCCTCCTGGTCATCCTGTGGGACTCATATACCCTCATCCTGGCTGGCTTTTGTCGGCCTGGGTACCGATCCCTCTTCTACCTCAG
Seq C2 exon
GGAGACTCGGGCGGCCCCTTGATCTGCAACGGCATTCTTCATGGAGTGGACTCCTTCGTGATTCGCGAATGCGCCTCCCTCCAGTTTCCCGATTTCTTCGCCCGGGTGTCCATGTATGTGAACTGGATTCACAGTGTGCTGCGGAGCGCAGAGCCCTGAGGTGCCCTTCTGTGCTCCGGGCAGCCTAAAACTGGGGCGACCACTAGCAGACTCCAGTGGGGAAAACGTGGAGTGAAGTAGACTGGTCCTTTCTAGGCTTTTCTGCCATCCACCCACCCACGGACCCGCTGGAATGGAGTCAGTTCTGTTCTCCAATTCCATGCGACCTCAATAAAAACTGAGATATATTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029814:ENSRNOT00000014687:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(35.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.4=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTGCATGAACTGAACGT
R:
ACCAGTCTACTTCACTCCACGT
Band lengths:
343-881
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]