BtaINT0121047 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014191 | QSOX1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:HGNC Symbol;Acc:HGNC:9756]
Coordinates
chr16:62843994-62845817:+
Coord C1 exon
chr16:62843994-62844217
Coord A exon
chr16:62844218-62845052
Coord C2 exon
chr16:62845053-62845817
Length
835 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
3' ss Seq
GCCAAATTCCTCTTTTTCAGCTT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCGCCCCCAGCGAGGACCCCCAGTTCCCCAAGGTGCAGTGGCCACCCCGCGAGCTCTGTTCCGCCTGCCACAATGAACTCCGGGGCACGCCTGTGTGGGACCTGGACAACATCCTCAAGTTCTTGAAGACCCACTTCTCCCCAAGCAACATCGTCCTAGACTTTCCTTCAGCTGGGCCGGGCCCCTGGAGGGGTGCAGAGAGGATGGCAGTCATCCCAAAACAG
Seq A exon
GTGGAGCTGGAGCTGGCAACCGGAAATGTTACCCTGGCCCCTGAGAAGGCTGAGATCCCGGTGGGCTCAGGGATAAAGGCCCCTGGAGGCACCATCCCAGTGGCGGGACTTGGGGCAAATCACCCCAAGATGCAGGCTGGCCTTGGTACGGCCACAGACGAGCCAGACCCGGGAGCTCCTGAGCACGTAGTGGAGCTTCACAGGGATAAGTCAAAGCAACCAGAGAGGGAGCAGCGCTTGAGCAGGAGAGACACAGGAGCCGTGTTGTTGGCTGAGTTCCTGGCTGGGAGGAACCTCCCTGGAGGCCCTTCAGAGCTGGGCCGAGTGGGCCGCAGCTCCCAGCAGCTGGCGGGCATCCCTGACAGGGAGCCCGAGGCTGGGGCCGGGCAGGGCCAGGGCCAGTGGCTGCAGATGCTGGGCGGGAACTTCTCCCACCTAGACATTAGCCTCTGCGTGGGGCTCTACTCCCTGTCCTTCATGGGCCTGCTGGCCGTGTACACCTACTTCCGGGCCAGGATAAGGGCTCTGAAGGGCTATGCCAGCCTCCCCACCGCCTGAGCTGTCCAACTCGGGATGGGGGCAGGATAGGAAGCTGCTGTCCACGGGCTCTTCCAGCCCTCTCTGCCTCCCTCCCCTTGCTCCTTGGCCGGGGACACCCAGCGAAACCAGTTGCTGAAGTGAAACCTCCCTGGGGCTTCAGGAAAGGGATGGTCCATACATAGGGAGACGTGCAGAGGGCCCGGGTCCATCTGCCAGCACGGGCAAGGGCAGCCTCGGGCAGCGGGGTCGGGAGGCTCCGTCCCCAGCCTCTCAGCGCCAAATTCCTCTTTTTCAG
Seq C2 exon
CTTATTTGAAGTCCTGCCTCATTCTCCCCGAAGCTTCAGTGTTTCCCGCTTGGTGTTGGCCCTAAACTGGGGCTGATGAGGCTGCAGTGTCCAAGGCTTCCCCTCTCCAGAGGAGGGGCCCCGGGACTGGAGTGGACCCCCTCCCTGCTTCCCGGGACTCCGTCCATCCTGCTGCAAAGAGCCCTTTGCGCCAGAGAAGGAAGGACTGCCTGTGGCCCTCTGTGCCTGCCCATCCTCCAGCCCCTCAGAACCCCCGCCCCAACCCCCGGGTGGGGTTTGGCTTTGGAAGGGGTCCTGGAAGCTTCTGGAAGTCCTGTTGTTCTCCCAGGTGAGGTCTTTGGGAGGAGAGCCTCTGGCTGGCTCCCTTCCCAAACCTTGGGTACAGGAGGAACACAGGCTGGAGCCGGTGTGTGACGGTACCGGGCTGGGGTGTGGGGTTTATGGAGGGCTATCTGGTCTCTAGTGCCTTAGCTGTGAGAGGGCCAGTGAAGCCTTTGCTCTGAATGTGCTTTCCGCATTGGGCTCAACCCAATTGGGCTCAAACCGCATTGGGTCTTCTGTCTTTTGATTTTAGTCTCCAAAATAGATGCTAATCTATGATTGTGGGGGGAGCCAAAGCGAGGAGAGGGCCGTTCCTCTCGAGGGTCACCTCCCATCGTGTAGAGGTTAAAAGGGTCAGAGGGGAGGGTGATGCTGTCCGCAGGCTCGATTCCCACTCCCCTCCACTGTTAGCAGGGGCTGTGGAATAAATTATTTTGTTAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014191:ENSBTAT00000018869:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=PD(14.9=20.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGGACCTGGACAACATC
R:
AGGCAGTCCTTCCTTCTCTGG
Band lengths:
343-1178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development