MmuINT0130210 @ mm9
Intron Retention
Gene
ENSMUSG00000033684 | Qsox1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:MGI Symbol;Acc:MGI:1330818]
Coordinates
chr1:157625285-157627068:-
Coord C1 exon
chr1:157626848-157627068
Coord A exon
chr1:157625982-157626847
Coord C2 exon
chr1:157625285-157625981
Length
866 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
CACCAAATTCTGTTTTTCAGCTC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTGCTCTGAGTGAGGACCCCCACTTCCCCAAGGTGCAGTGGCCTCCCCGTGAGCTGTGTTCTGCCTGCCATAATGAACTCAACGGACAGGTGCCTTTGTGGGACCTTGGTGCCACCCTCAACTTTCTCAAGGCTCACTTCTCCCCAGCAAACATCGTCATAGACTCTTCTGCATCTAGACACACAGGCCGGAGAGGGAGTCCAGAAGCTACCCCCGAGCTG
Seq A exon
GTAATGGATACATTAAAACTGGAGAGCAGAAATTCAGTGTTGGGCCATGAGCAGGCTGCTTCTGCAGAGTCCCCTGGAGCCACTGCCCTAGATGTACCAGCTGAGAAGCCTGAAGCAAGTGGCCCCCAAGAACTATACACAGGCCTCAGAATGGGTGGAGCTTCACCAGGGCAGGGCCCTCCTGAGCGCATGGAAGACCACCAGAGGGATATGCAGGAGAATGCCCCCGGGCAGCAACACTTGAGCAAGAGAGACACTGAAGCCTTATTTCTGCCTGAGGTGAACCACCTCCAAGGCCCTTTAGAGCTCAGGCGAGGGGGCCGCAGCCCCAAGCAACTAGCCCCCATACTTGAAGAGGAACCAGAGGCCCTAGCTATACAGGGCCAAGGCCAGTGGCTGCAGGTTCTAGGAGGGGGCATTTCCCACCTGGACATTAGCCTCTGTGTGGGGCTCTACTCCGTGTCCTTCATGGGCTTACTGGCCATGTACACCTACTTTCGGGCCAGGCTGAGAACCCCAAAGGGCCATGCTAGTTACCCCACAGCCTGAACTGCCTCGGCAGAGGACAGACAAGGAGCTGCTGATGTCTGGGGCTTTGGGTTTTTTTTTTTTTTTTTTGGCCCACTGGCCCCCTTGCTTCCTTTCTACCCCTTGTTCTGTTGTCTAGCTTAGGAGAGTGGCAAGTCCAAGAAAGTGAGTTGTTTCAGTGAACCCTGGAGTCTACTGTGAGAGGATTCCCTAGACAAAACAGAATCAGGGTGCCAGTCTCGCCTGACCAGCATGGGGTAGGAGCAGCCTGACGCAGGGGCTCAGGAGGCTTCTGGGAGGCTCAGGCCCTGGCTTCAGCACCAAATTCTGTTTTTCAG
Seq C2 exon
CTCTTGTGAAGTCCTGCCCCATTCCTGCTGAAGTCTCAATGTGTCCTGCTTGGTCTTGGCCTTAGATTGAGGCAGACAAGTCCAGAGTTTCCAAGGTTTCTCATCCAGAGGAGTGTATGTGGGCCGGGTGGGCTGGAGTGGACCTCCTCACTGCATTCTGAGACTGTCTACTCCCCTCCCTCACGACATGAAGAAAAAGCATCCCTCCGGCCTTCTCTGGCCTGGCCAGCTTCAGCACCTCAGGAGTGGGTGGGGCTTAGCTTCAAGAATGGGTCTGGGAGCCTCAGAAAATGATTCTGGTCACCCAGGTTCAAACTGGGGTTTCTGCTGCAAGAGTGTGGTTTGGCAGGCTGGGAGGGTGACAGTTGCTGCACTGTAGGGTGTAGTGCTTGCTTGGTGGTAGGGGCAAGGGGGTGGGTGATGCTGGGGTCTGTAGTGCCTTAGTCCTGGGCTAGCTGGGAGAGGGCAGACTCCTCTCTGAGCGGGGGTGCTTGTCTCTTACTTTGGTCTCTAAAATCAATGCTAACTTTGGGGTGTGGAAGGTGCTGGGTTTAGGGCAGTGGGCAGAGCCCTCTCTCTCCCGCTTGGGTCCACTGTGGGCAGGAGGGGGTGGAGAGACCAGCCCACATTTCCTTCCCCTGCTCCTGTGGCTTGGGAGGGATGTGGAATAAAATTATTTTTGTTAAGTCACGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033684-Qsox1:NM_023268:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.598 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=PD(14.9=5.8)
A:
NA
C2:
PF047778=Evr1_Alr=PD(14.9=5.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTTCTGCCTGCCATAA
R:
TGAGGGAGGGGAGTAGACAGT
Band lengths:
352-1218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: