BtaINT0121560 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96107928-96111339:+
Coord C1 exon
chr11:96107928-96108089
Coord A exon
chr11:96108090-96111189
Coord C2 exon
chr11:96111190-96111339
Length
3100 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGA
5' ss Score
4.72
3' ss Seq
CATGGGATTTATTTTTCCAGACA
3' ss Score
6.86
Exon sequences
Seq C1 exon
ATACCAGGACTTGGACTACCCCAGAGGTGACCGGCCCACCGCCATCCCCAAGAACTTTCCACACGTCATCGGCAGCCATTGGAGACCAGCTGTATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCCGTGCAGGATGTGCAGCTTCATGTGTTTGATGCAA
Seq A exon
GTATGAATGGGGTGGGAGACCCCTGGGGCCACCTCCTACCTGGTCAGGGCTGCCCTGGCCTGCAGCTTACCTGATGCAGGAAACAGATTAGAAAATGACAACCTGGCTGTGGGTCTCAATTCTAGACTTCTTCAGTATTTCTCTTAGCTGGTATCTTCTACCCATAGCTAAAATTGCATTTAAAGAGGAATAACTGATCAATTTAAAAAATGTAGACAGTATAGTTTATCAAGCAAAAGAGAAAAAAGTTTCTCCTTAGGCCTTTCCTTCCCACTGCCCAGACAGAGGTAAATACTGTTAGCTATTCCTAATAGTCTAACTTCCAGATTTTTCTGTGCATTTATAAATCATATGCACATGTATATGTGAACACCTATGAATTTTCTATGAACTTTGAAATTATATGAAAACTTAAAACACATACATGAAAATACTAATTATAAATACTGTTCTGACTTTTACTTTTGTGGGTCTAAGGGTAGATCTTAGGGGCTTCCCTGATGGCTCAGTGGTAAAGAATCCACCTGCAGTGCAGGAGACTCGGGTTCAGTCCCTAGTTTGGGAAGATTCCCTAGAGGAGGAAATGGCAGTCCACTCCAGTGTTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCTATAGTCCGTAGGGTCGCAAAGAGTCGAACAGAACTGAGCAACTAAACACGCATGCATACAAGGGTAGATCTTAGTTGAAAGCGTAAACTTTGCAGCCACAGGAAGTGGACTTGGAACCAGATCTGACATCTACTTTCTGTATCACTTTAGACTAATTTCTTAATCTCTCTAGGCCTTAGTTTGCTATAAAATGGAGATAGTAATAGTGCCTAACACAAAGAATTGGAAAGATTAAATGAGATAATGTAATAGTGTATAGCCATTCTGACACATAGGAAACACCTAATAAATTTTCACTGTATTATTATTATTTCTTCATTTAATCACACATCATGGATCTCTCCTAAGCCAACAATTTCCTTGCAAAGCATATTTTTCTGTGAGCATCCTTTATTCATTCAGTCATTTTCCTATAGATTGCTGACAGTGTTACAGTGAATATGTACATTAATTTATGTATGTGTTACAATGTTTAGGGCTCCCCAGGTGGTGCTAATGGTAGAGAACACACCTGCCAATGCAGGAGATGCAAGAGATACAGGTTCAATCCCTGGGTCAGGAGAATCCCCTAAAGGAGGGCATGGTAATCCACTCCGGTATTCACACCTGAAGAATCTCATGGACAGAGGAGCCTGGCAGGCTACTGTCCATAGGATCACAAAGAATTAGATATGACTGAAGTGACTTAGCACAGCACACAACATTTAATGTGGAATAGATGCTGAGGAGTGGAATCACTGGGTCAAAATGGTATGAATATTTAATATATTTAATATTGTAAGACCTTTTGCCAATCTTTTGTCTAAGTAGTGTTTATTTACATTTCTTTCTTTTAGTAGTGGGCATTTATGAATAACGCTTTACAAATATCATGTAACAAAAATAATTTTCCTGTGTTTTTACACCTTTTTTGAAAAAAGGCAATAAGCAAAATTGAAAACTTAAAGTTTAAATTAAAATTAATACATGTCACAATACGAATTTTTCCAGAAAAAATGGACTCTGATTCTTTTAAAGCAGTTTTAAAAAAATATTGGCTTTGAATACATAAAACTGTGAGAGAAAAAATATATGTACATATATATATGCCTACATATATGTGTGTGTGTGTGTATATATATATAATTCTATAACCTCAAAATTGTTAACATTTCAGTGCAATTATGGTCCTTTTTTTAAAAATAGTAGAGATAATTCTAGATGTGCTATTGTGTCTTGTATTTTTCACTTAAGCATTTCCCCAGTAATCACAAAGTTTTCTCAGTGTTTTTATTTATTTTATTTTATTTTATTTAACTTTACAATATTGTATTGGTTTTGCCATATATCAAAATGAATCTTCTCAGTGTTTTTAATGAGCACATAATATTCTATTATGACTGTAGCAATAACTCACTCATTCACTTGTTAATGGACTTAGGGGCTATTTCTGGTTCTCCCCTATTATTAATATAAACAATACTGTGGTAAACATACTTACCACTTAAGTATGCATATGCATCAACTTTCTCAGGTTATTTCAAATTGTATTTCTTGGAACACTGAGGGCTCTGTGAACAACCTTCAGGCATGTTGCAAATGGTAATTCAGAGATAAATTGTTTGTCAGGCTTTTGTCTAAGATAATTTTTGTAGCACTCCTTTAAGACTTTTCTGGTATGTTGAAGTGATTGATTTTCCTCAATTCTATACATGTACAATTTTGAAGATATGAAGGGTTATCAACAGGTAGAATGCATCTGCTCTATTAGGATCATACTCATATTAATAACTCTCGTACTGAGTCCTTTCTTTGTGCCTGTGCTTTACATGTATCATCTCATTTAATCCACACTTCAACCCTGAGAGGTAGGTATTACCGGGTACTCTCTTTCTCTTCATTTTATAGCTGCACTAACTGAAGCTTAGAAAATTAACACGTGCAAGGCCATATAATTATTCAGTGAAATAACCCAGTTTTAACTCCAAATCCTATATTCTAATCATTATCCTATACAACCACTTCAGGAGGCCCTGCTAACTTTAAAAGTAGTAAATTTTTTTCCCCTACTCTTCCAGCTAATCAATTAAGGATAGTGTTTTGAAAAAGAGAATACTCTGAAGGTCTGTCCCAGAAGAAGGAAGCTCACTCTTTTTAATTTTGGGGTAGTTCAAGGTTAAAGAAACTTAAGGGAGGTATTTTTTAAATTCAAAACACAAAGTGGTTCGTTAATGCCCAGTGGAAGGGGTAGGCATATTAGGTAGTGAGTTCTCTAGTCCTGGACACACGTCAGCAGAGGCTGTAAAGGTTGTGGATGGAGGGAGGCCTGGGTTGGGCTGGCAAGTCACAGTGAATGACCCCCAGGCCGCTCTCTGTTCAGCGCATCTCCACTTGCTGGGAGGTGAGGCTTAGGTATAGTCCTCACATTTTTGCTTCATACTTTTGTCACCTTATGTCATGGGATTTATTTTTCCAG
Seq C2 exon
ACACCCTGACCTGGTCACAACCAGAGACACATGGAAAACCTCCATCCCCCCGACATGGTCACGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCATGGTGGCTTGGCAGGGGACAATTTCTATGATGATCTCCATTGCATTGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098:ENSBTAT00000020093:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PD(51.0=45.5)
A:
NA
C2:
PF134181=Kelch_4=PU(68.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development