HsaINT0136370 @ hg19
Intron Retention
Gene
ENSG00000136933 | RABEPK
Description
Rab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:16896]
Coordinates
chr9:127982818-127990338:+
Coord C1 exon
chr9:127982818-127982979
Coord A exon
chr9:127982980-127990188
Coord C2 exon
chr9:127990189-127990338
Length
7209 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGG
5' ss Score
4.99
3' ss Seq
TATTGAATTTACTTTTCTAGACA
3' ss Score
7.2
Exon sequences
Seq C1 exon
AAACCAGGACGTGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAGAACATTCCACACATCATCGGCAGCCATTGGAAACCAGCTATATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCCGTGCAGGACACGAAGCTGCATGTGTTTGACGCAA
Seq A exon
GTATGGACTGGTGGGCACCTTGGGGCTGGTCAGGGCCATCCCAGTTTACACATTACCTAATATAGGAAGCAGAAGTTAGAAAAGGAAAGCCTGACTAAGTGTCTCACTTCTAGACTTCTTTGTTATATCTCTTAGCTGATATCTTTTTCCCACAGCAAAATTGGCATTTAAAAAGGGATAGTGAGGCCTGGCATGGTGGCTCACACCTGTAATCCCAGAGCTTTGGAAGGCTGAGGCAGGTGGACCGCTTAAGGTCAGGAGTTCGAGAACAGCCTGGCCAACATACCTTTTCTCTACTAAAAACACAAAAATTATCCGGGCATGATGGTATGCACCTGTAATCCCAGTTACTCAGGAGGCTGAGGCAGGAGAATCGCTTAAACCCAGGAGGAGGAAGTTTCAGTGAGCCAAGATTGGGCCACTGCACTCAGCCTGGGCAACAGAGCAATACTCCATCTCAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAACTAAAAAGGTAGGCCGGGAACGGTGGCTCACGTCTGTGATCCCAGCACTTTGTGACGCCCAGGTGGGAGGATCACCTGAGGTCAGGAGTTTGAAACCAGCCTGGCCATCATGGCAAAACCCCATCTCTACTAAAAATACAAAAATTGGCCGGGTGCAGCGGTGGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTGGCAATGAACCAAGATCGTGCCATTGCACTCCAGCCTTGGCAACAGAGCGAGACTCTCTCAAAAACTAAATAAAAAAATAAAAAGGTATAATGATCAAGTTAAAAAGTTTAAACCATACAATTTATAAAGTAAAAAAGTAAAAGAAAGAATAAGAAAGACAAAAAACAAACAGAAGTAAAAGATTCCCCTTCAGCCTTTCCTTTCCCCGCCTCAGGTACATGCCTGGGTGATTTTTTTTCTTTTTCTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTTGCCCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCGGCCTCCCAACTAGCTGGGATTACCAGCATGCACCAACATGTCCATCTAATTTTTTGCGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAAGCCTGACCTCAGGTAATCTGCCCACTTCAGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACTGCACCCGGCCAGATTTTTGTATTTTTATTGTAGAGATGCAGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCATGAGCTCAAGCAATCTGCCTGCCTCTGCCTGCCCACCTCTGCCACCACACTCAGCCAAAATTTTTACCTTGCAAAGTAAAATTGGGAAAATTAAGAGATAGCACATTCCCAAGCCAGAGTATTTGGGAAAAAAAAAAAAAAAGACACATCACAGTGTGACTTTTCTCTTTCCAGAAAGAATGGGCTTTGTGATTCTTTTAAAGCAGTTTTAAAAGTTTAAATAATATTGGTTTTGAATATATAAAACTATAAGGAACAAGAAAAAAAACATATGTATGTGTATATGTGTGTGTGTGTGTACATGTGTATGTACTATCACCCCAAAATTAAATTACTGTTAACATCTCAGTGTATTATCAATCTTTTTTTTTTAAGAACAGAGATAATTCAAACCAGATGTGGTGGCTCACGCCTGTAATGCCAGGACTTTGGGAGGCTGAGGAGGGCAGATTACTTGAGGTCAGGAGTTCAAGAGCAGCCTGACCAACATAGTGAAACCTCGTTGCTACTAAAAATACAAAAAATTAACTGGGCGTGGTGACGCACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCACTTGAACCCCGGAGGCGGAGGTTGCAATGAGCCGAGATCTTGCCACTGCACTCCAGCCTGGGTGAGGGAGCAAGACTCTGTATCAAAAAAAAAAAAAAAAAAAAAAAAGGACAGAGATAATTCTATATGTTACATTTGCATCCTATATTTTTCACTTAAGCATTGTTCCATGCAATCAGAAAGTCTTCACCAGCATTTTGAAATGATGATTATTATATAAATATTAGAGTCAGGGTCTCACTGCATTGCCAAGGCTGGTCTCAAACTCCTAGCCTCAAGTGATCCTTCAGCTTTGGTCCCTCAAAGTGCTGGGATTACAGGCATTGAGCCACACCACCCGGCCTTCACCATCATTTTTAATAAGTGCTTAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGTGGATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAGATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATCAGCCAGGAATGGTGGCGGGCGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGCAGAATTGCTTGAACCCAGGAGGCAGAGGTGGGTGGATTACCTGAGGTCAGGTAATCCTGGGCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGACGTGGTGGCAGGTGCCTGCCTGCCACCCTCTGCTGCAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGTGGAGGTAGCAGTGAGCTAAGATCACGCCACTGCACTCTAGCCTGGGTGACAGAGCAAGGCTCTGTCTCAAAAAAATAAATAAATTTTTTAAAAAGTGTGTAATATTTCCTCATGGCTATACTAATAATTAAACCTGCTCATGGACACTTAGGCTATTTCCAATTTTTGTCTATTATAAACAATACTGTAATGAACAAGCCAGGTATGCTGACTCATGCCTATAATCCCATCGGCTCAGGAGGCTGGAGGACCGCTTGGGCCCAGGAGTTTGAGGATGTAGTGAGCCATAATTGCACCACTGCACTCCAGCCTTTGCAGTAGAGCGAGACCCTGACTCTAAAAAAAAAAAAAAAAAAAAAATGCTATAAGGAACATATTTATGCAGAAACCATTTCAGGTAATTTTAAATTAAATTCCTTGGGACACTGGGGACTCCTTGAACAACCAGCAGGCATACCATAAACAGTAATTCAAAGACAAATTGTTTGGCAGACCTTTGTTTCAAAGAGTTTTTGCAGGCTGGGCGCAGTGGCTCATGCCCGTAATCCTTTGGGAGGCCACTTTGGGACACCAAAGCAGGTGGATCCCTTGAGGTCAGGAGTTCAAAACTAGCCTTGACAACATGATGAAACCCTGTTTCAACTGAAAATACAAAAAATTATCCAGGCATGGCGGCAGGTGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTCTCCTGGAGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGCAACAGAGCAACACTCTATCTCAAAAAACAAAAACAAAACAAAAAAAAAAAACAACAGAGTTTTTGCAGTACTCCTTTAAGACTTTTCTGGTATATAGAAATGATTAATTTTCCAGAATTCTATATATGTACAGCTTTGAAGATAAGAAGGGTTGCCTGTAGTAAAACGTAATAATCATCATATTCATAACTCTCATGTATTGGGTACTTTTTTTTCCTTCATGCTTTATGTATATTATCTCATTTAATTCATACCTCAGCTCTTAAAAGTAGGTATTGTCTTTTTTTTTTTTTTTTGAGATGAAGTCACGCTCTGTTGCCCAGGCTGGAGTGCAATGACACAATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTTGGACTGCAGGCACATGCCACCACGCCTGGCTAATTTTTAAAATATTCTTAGTAGAGATGGGGTTTTACTGTGTTAGTCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCATCTTGGCCTCCCAAAGTGCTGGGATTACAGTCATAAGCCACTGCGCCCGGCCAGTATTGTCTGTATCCTTATTTTACAGCCATAGAAACTGCAGCTTAGAGAAGTAATTGGTGAAAGGCCACATAGTTATATAGTGAGATAACCTGGTTTCAGCTCCAAATCCCATATTCTAACCATTATCCTATACTGCCACATCAGGAGTCCCTGCTAACTTTTATTTAAGACTAGTCTGTTTTTTTCCCCAACCCCTTCAGCAAATCAATTAAGTCTAGCAGGATGCAGTGGTGTGTGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGACCACTTGAGCCTAGGAGTTCCAGTCCAGCCTGGACAACATAGCAAGACCCCATCTCTAAAAATAATAATAAGACTGGGTGTGGTGGCTGACACCTGCAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATGGTCAATCCCTATCTCTACTAAAAATACAAAAATTAGCCAGGCATGATGGTGTGCACCTATAATCCCAGCTATTTGAAAGGCTGAGGCAGGAGAATTGCTTGAACCTGCGAGGCAGAGGTTGCAGTGAGAGCCAAGATCGTGCCATTGCACTCCAGCCTAGGCAACAAGAGCACAACTCCATCTCAAAAAAAAAAAAATGGCTGGATGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCCAGGGGGGTGGATCTCTTATGGTCAGGAGTTTGAGACTAGCCTAGCCAACATGGCAAAACCTCAGCTTTACTACAAATATGAAAAAATTTAGGATGGGCGCAGTGGCTCATGCCTATAATCCCAACACTTTGGGAGGCTGAGACAGGTGGATCATTTTAGGTCAAGAGTTTGAGACCAGGTTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAAGGGCCAGGAGTGGTGGCTAACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTATCTACTAAAAAACATACAAAAAATTAGCCGGGCTTGGTGGTAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGTTGACTCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCACCATTACACTCCAGCCTGGGTGACAGAGGAAGACTCTGTTTCAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAAAAAATTTAGCTGGGCGTGGTGGTGCACACTTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGAAGGCAGAGGTTGCAGCAAGCCAAGATCGCACCACTGCACTCCAGCCTGGGTAAGAGAGTAAGACTTTGTCTCAAAAAAAAAAAAAAAAAATTAGCTGGGTGTGGTTTTGGGTGCCTGTAATCCCACCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGGTTGCAGTGGGCGAAGATCGCACTTGTGCATCCTAGCCTGAGCAACAGAGCAAAACTCTGTCCCCCGACCCCCTGCAAAAAAAAAAAAAAAGTTGAGTGCCACTGACATAGACAAGTAACTTGTCCAAATATTAGTCATTAAGGGATGAAATTGTTATTGAAACATTACTTATAAAATAAATAAATAACAAGGCTGGGCACAGTGGCTCACACCTATATCCTAGCACTTTGGGATGCCGAGGTGGGCAGATTGCCTGAGCTCAGGAGTTTGAGACCAGTCTGGGCAACATGGTGAAACCCCGTCTCTATGAAAATACAAAATATTAGATGGGGCCGGGCACGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGAATCACGAGGTCAAGAGATCAAGACCAGTCTGGCCAACATGGTGATACCGCGTCTCAATTAAAAATAGAAAAATTAGCTGGGGGTGGTGGCATGTGGCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCGGGGAGGCGGAGGTTACAGTAAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTGCAAAAAATAATAATAATAAATAGAAGCCAGGCGTGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTAAAGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGCATGTGGTGTTGCATGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTAAGCTGAGATCATGCCATTGCACTCCAGCCTGGGCGACAAGACCGAAACTTTGTCTCAAATAATAATAATAATAATGATAATAATAATACATTAAATAAATGAATAACAAGAAGATGACTCTGAAGGGCTGTCACAGAAACAGACTCATTCATTTTGACTTTGTGGCAGTTTTAGTTTGAAGCTAAAGAGGAGATCGTTTTTATTTCATAGCGAGAAATGGCTTCCGGGTGCTGAGTAGAAGGGGCAGGCATGTTTGGTAGTGGGCTCTCCAGCCCTAGAAGCATGCACGCAGAGCCTCTGTAGGACTTTTTTTTTTCTTTTTTTTAAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAATGCAATGGCGCAATCTCGGCTCACTTCAACCTCCACCTCTCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACTAGGCACCTGCCACCACACCTGGCTAATTTTTTTTTTTTTGTATTTTTAGTAGAGACAGTGTTTCACCATGTTGGCCAGGCTGGCCTCGAACTCCTGACCTCAGGTGATCCACCTGTCTCGGCCTCCCAAAGTGCTGGGATTACAACTGTGAGCCACCGCAGCAGCCTATAGGATGTAAAAGGAGGGATGCCTGGATTGGCTGGGGGAGTTGGAGTGAATGACCCCAGGGTTGCTTCCTGCATGGGACAGCTCCGCTTGCTAGGAGGTGCTACAGAGGCTTGGGCCTGTTTCTCGTGTTCTTTTTTAATAGTTTTGCCATTTGATGTTATTGAATTTACTTTTCTAG
Seq C2 exon
ACACTCTGACCTGGTCACAGCCAGAGACACTTGGAAATCCTCCATCTCCCCGGCATGGTCATGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCACGGAGGCTTGGCGGGGGACAGATTCTATGATGACCTCCACTGCATTGATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136933-RABEPK:NM_001174153:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PD(19.2=18.2),PF134181=Kelch_4=PU(70.4=69.1)
A:
NA
C2:
PF134181=Kelch_4=PD(27.8=29.4),PF134181=Kelch_4=PU(68.0=66.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)