BtaINT0122048 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61695931-61696992:+
Coord C1 exon
chr16:61695931-61696066
Coord A exon
chr16:61696067-61696840
Coord C2 exon
chr16:61696841-61696992
Length
774 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGC
5' ss Score
-0.67
3' ss Seq
ATATTTCTCTTTGTTTCCAGTTT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GTCCTGAAGTAGGAGCATCTCCACAAAGTGGAAGAAAAAGCATGGCAGCTGAAGGAGCCTTGCTACCACAGACACCACCATCCCCTCGGAACCTGATTCAGCATGGACATAGGAAGTGCCATAGCTTGGGTTACAA
Seq A exon
GTCAGCACTTTTAATTTTATCTTTCAAATTTTTATGTATTTAGTTGGATTTATTTTCTACTTATTTTACTAGTTGGACAGAAAATAGTGTCCTTGCATAGTTTTATTTGTGTAAAGTAGTCTTTTTCTGATTTAGTAAACTATCTTGTTTGCATAAAGGCATTTATCTCTTCCTTACCTTAACTTGGAAATGAGCTTTTTCCAATAGTGCTTTCACATTTTGGGGAATAAAAATGAACATTACAGGTCGTCATCATAAATAAAATCAGGAAAGCAAACACTGTTTCCATTTTAAATTATAACTTATATCATTGCTTGTCTTAACCAAAACAAGTCACCATAAATAAAGCATATAAAAACTGTTCTTTTTATAACAAAATACAAAGAAAGGGAAACTGTCTTTTCGTTTAGCTTTACAAGATTGTTTCCTCAAAGTGGACCCCAGGTTCACCTTTGCCATGATTTTTGTGGAAATTTAATAGACATTTTTCAAAAGCGAATGTGAAAATAATTTTTAATGAACCCAAGCATCAAGATTAAAGTATTTTCTGTTATATAGGTAGATATGGCCTGGTTTTCTAAAAAATTTTTCCCTAAACTGTTAGCTTGAGGCTTTCATGGTAAAATCTGTGTGTTCATTAGTATGAGAGTTCAGAAGTAAGTTCAGGATAGCAGGTACATCTTTTATATCCTGAATCTTTATGTAAGAGTATCTTTTATATCTGAATTAGTAACAGTAATGAAAGATATGAAAAATATTTCTCTTTGTTTCCAG
Seq C2 exon
TTTCATTCATAAAATGAACACAGCAGAGTTTAAGAGTGCAACGTTCCCAAATGCAGGGCCAAGACATCTATTAGATGATAGCGTCATGGAGCCCCATGCACCATCTCGAGGCCAAGCTGAAAGCTCTACTCTTTCTAGTGGAATATCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718:ENSBTAT00000034000:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGTGGAAGAAAAAGCATGGC
R:
TGATATTCCACTAGAAAGAGTAGAGC
Band lengths:
262-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development