BtaINT0122627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61282301-61288953:+
Coord C1 exon
chr16:61282301-61282445
Coord A exon
chr16:61282446-61288808
Coord C2 exon
chr16:61288809-61288953
Length
6363 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
ATCATCTCGTCTTCAAATAGGGG
3' ss Score
7.87
Exon sequences
Seq C1 exon
GATTTTCTGACGGACTTGGTGATGTCTGAGGTGGATCGTTGTGGAGAACATGATGTCTTGATCTTCAGAGAGAACACCATTGCCACCAAATCCATTGAGGAATACCTCAAGTTGGTGGGACAACAGTATCTTCACGATGCACTGG
Seq A exon
GTATGGAGAAGAAAAATATCTCTATTCTTTCGCTTTTGATTTTTAGGTTATTTCACCCTCATGAAACAACCAACTGGAACTCAAATTCTGAACGTTATTTAGTTCCAACTGATTAAAGTGTTAAAATTGGAGTTTCAATTGTAGGAAGTGTCGACAATACTCACCAGGGGAGGAATAGAAGATCTGTTTCTTATACCATGTACCATGAGAAAGCTCATGAGCACAGGCAGTACCCCCATGCCCTCAAGTTCCTGACATTCTGAGACATACAGTGATGTTAGTAATGAGATGTTACATCTAGTTGATCTGTTTCCTCTGAAGTCTTGGGTATTTACATCATGATATATTGGGTTGGCAAAAGGTTCATTTGGGTTTTTCCATACCATCTTATGGAAAAACTACAACAGACTTTTTGGCTAACCCAATAAATACATAACCTAAGTTTTGAAAGTGTTAGCATTTGTTATCATGCATCAGCAACGGAGAAAGTCCTGCCAGTTCCCACAACTCCCAGTTTCTGCCTTCAAGACCTACAGACTTTGTCATGACAACTAAGTTTTCTCCAATCAGTAGTTCTTACTGACTGGGTCACCCACTTACAGCTCCATGTTTGGTCATAAACTTCAGGTGTTACCACTAGAGTAAGGCACTGTCCTTGGCACTTCATTGTACATTATGATAAAGCAGACATGAGTTCCTTAAAGAACATTGTCATTATCTTTATGTCCCCAGTCCTTCACACAGAATGTAGAACAGCATTGTCCTAAAGGAACTTAATGTGAGTCACATGTAATTTATATTTTCTAGTAGTCACAGTATAAAAAAGGGGCAAGAGAAACAGGTAAATTTAATTCCAATAACATTTTATTCAAACCAGTATATCCAAATATTATTTATTATATCATCAATATAAGAATTATAAACAAAATACTTTACTTTTTTCATGCTTTTTGAAATTATGTGTATTTTATCTACATTTATTGCATGGTCAGTTGCAGTAGCCACATTTCAAGTGCTCAATAGTCACATGTGACTGTCAAGAGTAGACAGGTGTTGTGTTGAAGGCAAGAAATAAGACTGAATGAGGTAATCCCCAGTGAGGTAATAGGACTTGGCAACTCTTCCATTTGTGGGAATGGGGCAGGGTGTGGTAGGGGAGGAGGTCAAATATTACAGTGAATTTGGGGCCTTTGTGAGTGACAAGAAAGATGATGAGATTCTTTTTTTTTTTTTTTGATGATGAGATTCTTAACAGAAAGAGAACATAAAAGTAGTACTCTCGAAAGAATGAGAAATGATATTTTCACTTCACTGTATTTAACTTGAAGTTCAAGTGGGAAGTCCCAGGGGTTCTAGGCAGGACATCCCAAGACTTCTGTCTAGCTGGCTGGTGGAAGTTTAGGACTGTTACCCATGTGGAAGGAATCAATGAAACTACCAGATTACAGGAGAAAGAGAATAGGGCCAAAGACAGATCTGACAGTGTTCCTGGCTTACAGTGTAGAAAGAAGCAGAGGAATGTGAGAAGAGATCGGAGATAGAGGAAATGTGCATGCCCGTGCGAAAAAAAAAAGAAGAAGGAAGAGTCTTAGACACCAAGAGGAAAAAAGCATTAAGAGAGTCAGAGATTAAGGAAGGTAAAGAGTCAAAGAAAAACATGGCTGTTGATTTCGCTCATTAGTGATGCCTGGGATTGTTCTCAGGAGCCAGGTCACAGGACGTAAAAAGTGAATGACTGCTTGAGGAACAGCAGGTAGACACTGTGTTGGACTGTGAGTGCTGGGCTCACTGTAGTAGCAGTTAATTCCTACTCTAGAGAAGTAAATTTTTTCTTCTCCTGCTTCCTATCTTCATTTTTTTTTTAAGCCATATGCTTTAGTTTAAGATCTAATGGGAATTTAGAAGAATGGCGAAAATGGACTTTCATTGACTTTAGGAAAGGTACAGAATCAGTGTCATATAAAAAACTTATTACAGTCATATCATGAATTATATATCATAATTTGCTTTAATGATTTGCACCACCTTATAAAAACCAATAATGATGCATCTCAAACAGTATTCTCTATTCTGGAGAGATAAAGAGGTAGATATTTGTTGACCATCTACTGCTTAAAAATCAAATATTCATATTCCACCATTCAATGTACTAACCAGGATTTCCAAATGAAATAATTCCTGAAGTGAAAAGGAGAGACAAGTCCTTTGATAGAACAGTTAATAATTAAATATCTGATTGGCTCATTGAGATATGAAAATTCAGTGAGCAGGGGAAGAAATTCACGTAACCCCACAAAGATCTCTGTTATCATTTTTGTAACCCAAGAGCAAGGGCCAGGGTGGTGAAAATGGGTGCTGCTTCCAAGACACAAGCAAAATTAATTAGTAAGCTTCTTCAGGACAGATGCTGCTGTCTTCTCCCCATCTAACTCTCCATATTTCTAGTTAGCCTTTTAATCCTAGATTCTTGGTATCTAATTTTTCTCCTGTATTTTATTTTTTTATGACAAATTCTGTTTTGAAAACAATTTACAGAATACATCTTAGCACCAGTATAAATTAAGACTTATTTTGTATAGTTCAAAATAGTAATAAGTGATTTTCCAAAAGTAACCCTGAAGAAGTGCAAAATTTTCAGTTCCCTTAGAAAGATTGTTTTTTTCATCATAGGATACTGTACTTGCTACAGCAGGAGCCTCTAATCATAAAATTAAATAAGACTTCATGGTAAGTTTTAAATAAAAAAACTTCACAGTGAAGTCTTAGTAAAACCAAAAAATCACATTAATAAGTACAGCTGAGCACTCTGAATAATTCAAGTTTTACTGTATTTTATACAGTTTGGGCAAAAAAAAAAATAGATGTTATTTGCAGACTGCCTGAAGAATGCTTAGAGAAAACTGAGTTAAAAGTTGCCAATCAAATTAAAGAATATCTGCCTGCTTTTTAGCCAGTCTTCATTTATCTTGATTAAAAGCATTAATGTTGATAGCATAGACTCTGCCTCAATTAGACTTAAATCTTTCATCCATTAACCCCTTTTACTTTTCTAATTGAAATCAGATTTCGTGTTGATGTCCTGTGACACACAGGAAATACCATCTTCTGTGACATACAGAAAGGGCTCTAACATGGCCTGATTCCCACCATTGACGGCGGAGGCAAATTTCCTTTTAACAATAATATATCCATACCTATTGGCTTATTTCTACACATGAAATTTGGGTGCTAGAAAGTAATGAGATAATGAAACATTATAGAACATTGTCAGTTCAGTTCAGTCTCTCAGTCGTGTCTGACTCTTTGCAACCCCATGAATCACAGCACTCCAGGCCTCCCTGTCCATCACGAACTCCCGGAGTTCACGCAAACTCAAGTCCATCGAGTCGGTGATCCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCATCATCAGTCTTTTCCGATGAGTCTTCACATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCATTCCTTCCAAAGAACACCCAGGGCTGATCTCCTTTAGAATAGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGCTCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGGCTACTGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTCCCCCCCACCCCCGCTGGCCCCCAGCAAGGCCAGAGAGCAGATATGAAAGGATTAAATCTGTCTCAATAATTTGTAATCAGCTAATGGCACCCCACTCCAGTACTTTTGCCTAGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCAGTTTCATGCATTGGAGAGGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGACTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAAGCAAGCAAGCAAAACAGCCTCTAGGTGCAGATCTATAAAAGTTCACTTTTCAGTGTGGTACTTGCCACATTATCAGACACATAGGTTATAGTTTCAAAAGTGAAAAGAGTTTTCTCAATTTCGGAGGATTTTAATTATAATCAGGTAAAAGAAAAAAACTTTAGACAGTCAATTTGCTTCCAGACCCTTGAGTTATTTATTTGGTTCTTTTTTTGAAGGAAAAGAGAAAAATACTCTCAGAATTCACAAGTTAGTATTATTTCCCCCAGAATAGGTACAACTCATTAAGCCGAATATTAATGATATAAATTTAGAGGCGGATTGATCTTTACATCAAGTATTTGACATTGATGACTTAGTTTTAAATTCTGGTACTCTTTAAAATGAGGTGAAATCTGTGGGCGCACAGAGCCTAGGTGACACTGAAAATGTGTTCAGTAGAAATCTTGTGAGAGTTGGTAAACAATTTGAAAGCCTTTGGTTTTTTTCACTTGATGAAAAGTTATTTTACTAACTTTGGTTTTTTTTACTTGATGAAAAGTTATTTTAAAACTACAAAGTATGTACATAACACTTACTGTGGGGGCCCCTACTAAGTACCCAGGCACCATATTAGACACTTTTCTTTTCATGCCCTATTCCTCACCATAGCTCCAGCAGGTTGGAGTTCTTAACACTATTTTCCAAATAAGGCACCCGAAACTCAGACCAGTTAAGTGACTTTTCAGGCCCCCCACAGTTGGCTAAGTGATGGGTCCAGGATTTGACCCTAGATCTGTCTGGTTCCAGAGCCTTTAATTGTTCTCTGCATCACTTTCTTTTCTGTGCATCATTTAAATTCCTGTCCTCCAAGCATTTTACTTCCAAATAACCACTTCCCATCCTCTATCACAGCTATTTTTTTTTAATCTTTCCTTTACCTTAGTACTAGCCATTTTGATAGAAAATACTCTTTGTTATTGCTTCTACTTCTTAATTTTTTTGTAGAAATTACTGTTCACTTCCATGATATCTATTAGTAACTAGCCTGAACTTCAGTTACTATGAACAGATTTGGAAGGAGCTTTGAAAGATCTACTCCTTTTTCATAAAGATGTATTAAAAAAAAAAAAGAAAACCATACTACCATTTCTGACAACTATTTTTTGAGTTCCTGCAATGCTTTGGGGGAGAAAGCAATGGCGACCCACGCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTTGCGAAGTCGGACACGACTGAGCAACTTCACTTTCACTTTTTACTTTCATGTATTGGAGAAGGAAATGGCAACCCACTCCAGCGTTCTTGCCTGGAGAAACCCAGGGATGGAGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGGCACGACTGAAGCGACTTAGCAGCAGCAGCAGCAATGCTTTGGAAGCTACTTGATAGGCTTGGGATTTGAACTTGAATAGAACCCAGTCCCTGATCTTCAGTGGTATTCATCCTGAAGATGAGATGAGTGTGTGAACAAGTAAGCACAAAATAGCGTGAAGCATAGAACAGAACAGATACAAGGTATGGTTCATAAAGGAGGATAAACAGATTAGGTAAAGATTTGCTCTTTCAGGAAATACTGGGCATATCTCTACAAAGGATAAGATGTATGAACAGGGCATCTAAACTAAATTTATTTGGAAAAACATCCAAATTATATACAGAGATGCTGTGCTGTGTGCTATGTGGAATTACTATCCCCGTTAGGAGACGTGGGCCTAGAATTACCTGAATCTGAGTTTGGCACTCAGTTTGGCACCAGTATTAGCCCTTAAAAGCTTAGGTGGGCTATTTGGTCAGACCTGGGGTATTTATTCTTCTAAAATAGTAACAACATTATTTATAACGTAGAGAGGCGTTTAATGAGTTCCTGCTAATTAAATATATTTGTGGTTTCAGGTAAAAGATGTAAAGTTGTAGCATTTTTAAAGTAGTTTCATTATTCTTTTTATAAATATCATGATGGCAATGTTAATGAGTGCTGTTTTTCCACTTCAGGATAAGGAAAATAAACAAGACATGTAGGAGGTGATAAATCTCAGCTTCCAAAACAATACCCTTTCGTGAACAGTCTTGTGCCCTCCGTGTCAGGCACCAGAAAGAGTTCCCTATTACACAGTTTAGTACAGAAATCCTAAATTCTTTTGTACTATTCAGGAAGACACTATTTATAGTTATCCGATCCATCATCATCTCGTCTTCAAATAG
Seq C2 exon
GGGAGTTCATCAAAGCGTTGTATGAGTCAGATGAAAACTGTGAAGTGGATCCCAGCAAATGTTCATCCAGTGAACTTCTGGACCATCAGAGCAACCTGAAAATGTGCTGTGAGCTGGCTTTCTGCAAGATCATCAACTCTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537:ENSBTAT00000020658:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(27.3=95.9)
A:
NA
C2:
PF0061614=RasGAP=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development