BtaINT0123567 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94011537-94012046:-
Coord C1 exon
chr11:94011912-94012046
Coord A exon
chr11:94011651-94011911
Coord C2 exon
chr11:94011537-94011650
Length
261 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GAAATCAGTATTTTTCTTAATTA
3' ss Score
-8.61
Exon sequences
Seq C1 exon
GCCAAGAGTAACTCATTGCTTCTTCAGAGGGAGGCCAATGCTCTGGCTATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTCACATTAAATCTTCTAAGTAAGGAAATTGAACTGAGAAATGGAGAG
Seq A exon
GTAAGGACACTGACCCTCTCAGCTTCATCCCTGGTATATTTGCTGTTTGCTGCTGCTGCATGTTGTTTTATCCATTGTTTAGTGCATTTTATGCCATTACTTAGCATGGCTTTTTCTGGTAGATGATTGCTTTTAAAATTTAACAGTAGCAATAAAATTGTAATCCCAGATTTCTTTTCTTATATCAGTCATTGAGATTCGCATTTTCATTTAAAAGGGAAGCCCCAGTTTCCACAGATATGAAATCAGTATTTTTCTTAA
Seq C2 exon
TTACAGAGTGATTATACAGAAGATGCAGCTGATACTAAGCCTGATAGGGATATTGAGTTAGAGCTGTCAGCACTTGATACTGATGAACCTGATGGACAAGGTGAACAGATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867:ENSBTAT00000032789:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAGTAACTCATTGCTTCT
R:
TCTGTTCACCTTGTCCATCAGG
Band lengths:
244-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development