MmuINT0133087 @ mm9
Intron Retention
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37232409-37232788:-
Coord C1 exon
chr2:37232654-37232788
Coord A exon
chr2:37232517-37232653
Coord C2 exon
chr2:37232409-37232516
Length
137 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AATTTTTTTTTAATTTATAGAAT
3' ss Score
7.97
Exon sequences
Seq C1 exon
GCCAAGAGTAACTCATTACTTCTTCAGAGGGAAGCTAATGCTCTGGCCATGCAACAAAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACTTTAAATCTTCTAAGCAAGGAAATTGAACTAAGAAATGGAGAG
Seq A exon
GTAAGGGAACCGAACCTCTCAGCAATACACTCTCAGACTTCTGAACTAAATCTTTAACTGTACCATTAGGCTTCTTATTTTTATTTAAAAGAGATTCTGCAGGTATAAAATTAATATAATTTTTTTTTAATTTATAG
Seq C2 exon
AATGACTACACAGAAGACACTGTAGATACAAAGCCTGATAGGGATATTGAGTTAGAGCTTTCAGCCCTTGATACTGATGAACCTGATGGCCAGAGTGAACAAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376-Rc3h2:NM_001100591:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATTACTTCTTCAGAGGGAA
R:
TTCAATTTGTTCACTCTGGCCA
Band lengths:
234-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: