HsaINT1029052 @ hg38
Intron Retention
Gene
ENSG00000056586 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr9:122851323-122854086:-
Coord C1 exon
chr9:122853952-122854086
Coord A exon
chr9:122851437-122853951
Coord C2 exon
chr9:122851323-122851436
Length
2515 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AAAATCAGTATTTTTCTTAGTTA
3' ss Score
0.41
Exon sequences
Seq C1 exon
GCCAAGAGCAACTCATTACTTCTTCAGAGAGAGGCCAATGCTTTGGCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAACCTTTTAAGCAAGGAAATTGAACTAAGAAATGGAGAG
Seq A exon
GTAAAGAAACTGAACCTTTCGGCTTCATGCTTAATGTATTTGTTTTCTGCTGCTGCATCTTGGTTATACCATTACTGAGTGCATTTTGGTGTGCCTATCTCTGATGGATGATTGATTGCTTTTAAAACTTATAACAGAAATAAAATTGTAATCCCAGATTTCTTAAATAATTCTTTAACTAGATCATCGGGATTTTTGTTTTTTTGAGATGGAATCTTGCTCTATCGCCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAGCCTCTGGCTCTCAGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCACCCACCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCTAAGCTGGTCTTGAACTCCTGACCTCAAGTGATCTGCTCGCCTCACCTTCCCAAAGTGCTAGGATTACAGGTGTGAGCCCCCGTGCCTGGCTGATCATTGGGATTTTTTACTTTAATTTAAAAGGGAAACCCCAGGTTCCACAGGTATAAAATCAGTATTTTTCTTTTTTTTTTTTTTTTTTTATTGATCATTCTTGGGTGTTTCTCACAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGCGTTTGTGTCCCTGGGTACTTGAGATTAGGGAGTGGTGATGACTCTTAATGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAAGCCATTTAACTCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGAGGTAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTCTACTTCTTTCTACACAGACACGGCTACCATCCGATTTCTCAATCTTTTCCCCACCTTTCCCCCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCGTTCTCAATGAGCTGTTGGGCACACCTCCCAGACGGGGTGGTGGCTGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGATGGGGCGGCTGGCCAGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCAGGGCAGAGGCGCCCCTCACCTCCCGGACAGGGCGGCTGGCCGGGTTGGGAGCTGACCCCTCCACCTCCCTCCCGGTCAGGGCGGCTGGCCGGGCCGGGGGCTGACCCCCACACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCTAGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCAGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGCCGGGCGGAGACGCTCCTCACTTCCCAGACGGGGTGGCTGCCAGGCAGAGAGGCTCCTCACTTCTCAGACGGGGCGGCTGCCGGGCGGAGAGGCTCCTCACTTCTCATACGGGGCGGCTGCCGGGCGGAGGGTCTCCTCACTTCTCAGACGGGGCGGCCGGGCAGAGACGCTCCTCACCTCCCAGACGGGGTGGCGGCCGGGCAGAGGCATTCCTCACATCCCAGACAGGGCGGCGGGGCAGAGGCGCTCCCCACATCCCAGACGACGGGCGGCCGGGCAGAGACGCTCCTCACTTCCTAGATGTGATGGCGGCCGGGAAGAGGCGCTCCTCACTTCCCAGATGGGATGGCGGCCGGGCAGAGACGGTCCTCACTTTCCAGACTGGGCAGCCAGGCAGAGGGGCTCCTCACATCCCAGACGATGGGCGGCCAGGCAGAGACGCTCCTCACTTCCCAGACGGGGTGGCGGCCGGGCAGAGGCTGCAATCTCGGCTTTTTGGGAGGCCAAGGCAGGCGGCTGGGAGGTGGAGGTTGTAGCGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGCCATTGAGCACTGAGTGAACCAGACTCCGTCTGCAATCCCGGCACCTCGGGAGGCCGAGGCTGGCAGATCACTCGTGGTTAGGAGCTGGAGACCAGCCCGGCCATCACAGCGAAACCCCGTCTCCACCAAAAAAATACGAAAACCAGTCAGGCGTGGCGGCGCGCGCCTGCAATTGCAGGCACTCTGCAGGCTGAGGCAGGAGAATCAGGCAGGGAGGTTGCAGTGAGCCGAGATGGCAGCAGTATAGTCCAGCTTCGGCTCGGCATGAGAGGGAGACCATGGAAAGAGAGGGAGAGGGAGACCATGGGGAGAGGGAGACCATGGGGAGAGGGAGAGGGAGAGGGAGAGCAAAATCAGTATTTTTCTTAG
Seq C2 exon
TTACAGAGTGATTATACAGAAGATGCAACAGATACTAAACCTGATAGGGATATCGAGTTAGAGCTTTCAGCACTTGATACTGATGAACCTGATGGACAAAGTGAACCAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056586:ENST00000373670:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains