HsaALTA1003619-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000056586 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr9:122851323-122854086:-
Coord C1 exon
chr9:122853952-122854086
Coord A exon
chr9:122851418-122851430
Coord C2 exon
chr9:122851323-122851417
Length
13 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AGTATTTTTCTTAGTTACAGAGT
3' ss Score
0.14
Exon sequences
Seq C1 exon
GCCAAGAGCAACTCATTACTTCTTCAGAGAGAGGCCAATGCTTTGGCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAACCTTTTAAGCAAGGAAATTGAACTAAGAAATGGAGAG
Seq A exon
AGTGATTATACAG
Seq C2 exon
AAGATGCAACAGATACTAAACCTGATAGGGATATCGAGTTAGAGCTTTCAGCACTTGATACTGATGAACCTGATGGACAAAGTGAACCAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056586-41-55,41-54,41-53,41-52-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCCCTGGATGAAGGCCG
R:
CCCTATCAGGTTTAGTATCTGTTGCA
Band lengths:
103-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains