BtaINT0124256 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013645 | RFFL
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:24821]
Coordinates
chr19:15387846-15395190:+
Coord C1 exon
chr19:15387846-15388235
Coord A exon
chr19:15388236-15395106
Coord C2 exon
chr19:15395107-15395190
Length
6871 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GCATCTTTCTCTCCCCACAGGCC
3' ss Score
13.33
Exon sequences
Seq C1 exon
CAGACCTGCTTGGACTGTAAGAAGAACTTCTGTACCAGCTGTTCCAGCCAAGTGGGGGCCGGGCCCCGCCTCTGCCTTCTCTGCCAGCGCTTCCGTGCCACGGACTTCCGGCGGGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCACGACATCTCTACCGACATGTGCCGGGAGAAGGAGGAGCTGGTGTCCCTGGTGCTCGGCCAGCAGCCCGTCATCTCCCAGGAGGGCAGGACTCAGGCGCCCCACTTGGGCCCCGACTTCCCGGAGCAGCAGGCCTTCCTCGCCCGGCCCCACACCAGCACCGTGCCGCCTACCTCACCCGGCCTCCAGTCTGCACCCCCCGGCCAGGCGCAGGGCCGGCAGCAG
Seq A exon
GTACGGCCAGTGCGGCCTCCCCTCTCTCCAGGGTAGGTTCCAGTTCCTCTCCCTCCGCGCCGCGGGAGAGGGGCTCAGTGCGCGGGTGACTGGATGCCTTTCTGCCTCCCACCGACGGAGGGCGTTTTCTGGACTTCAGACTCACGTTTGGGCTTTTCTTAGAGAAACGGATGCACGGTACTGGGTTTTTGTATTTTTCTGTCTTTGTAATAGGTTCCTATCCCAGTTAGGGAGTTTTAAAAAATTGGTTGTTCTAGAAACATTTTGAGAAAATTCACTGTTGGGTCTCCACATTTGGTTCTGATCAAATTACCCTCCTGCTTTCTCACCCCATGGTCTTCTTGGGCCGATGGGGAACTCGGTGCCTCAGTGATAGTCACAAGGCACCAGGGAGAAAAAGGACCACGTAGGACTTCCCTGGTGGTCCAGCAGTTATGAGTCCGAGCTTCCAGGGCAGGGGGCACAGGTTTGATCCTTGGTTGGGGAAATTCTGCGTGCTGCGTGGTGAGGCCAAAAAAAGAGTATGTGGAGGCGAGACAGAGGAGGAAAACACTGTGACCGAGACACGGGCACGGCAGCTCCTGCCCGTGCTGGCTGGGCTAGGGTGTGCTTGCAGGGCTATTGAACAGTAGGCGGCCTTATCAGCATCCCAGCAGGGCCTGGGGATGGAAGGCGCAGGGCAGCACATGGACTGAATTATGAACCAGGCACGGGAGGCACAGAATCGAGGATTATGTTGCTTCTACACTGAGAAAGCCCTTCTGAGGGGGAAGGTAGATGTGGAAACCAGCTGTTGGATTAGAGTGATGCCAGTGGACCTCAGGCTTCCCAGGTGGCTCAGTGGTAAATAATCCACCCACCAATGCAGGAGACTTGGGTTCTGTCCCTGTGTCAGGAAGATCCCCTGGAGAAAGAAATAGCAACCCACCCCAGTATTTCCTGGAGAATTCCATGGATAGAGGAGCCTGGTGGGCTACAGTCCATACGGTTGTAAAGAGTCAGACACGACTTAGTGACTAAACAGCATCGTTATTATCACTGAGGAGAGAGGGTTGAGGGGGGTGAAAGAGTAAAGGATAGGGTGTCAGACAGCAAGACTAGTGTCAAGTTGTAAGATAGGAAGCAAACACCCACACACTTGGTGGAGAGCGGGGGAGGACCCAGCACCAGCAAGGCAGGAGGCTTCAGCCAGAGGCCTGGGGTGGGGACGGGGGAAGTGGTCCCCCGCCTCCAGTGGGAGAGGCACTGGACAGAGGATGGGAAGTAGCTGGAAGCTGTGTGTGTGTGGCCCCAGGGGACCCTGTAAGGTTAGGACTGACAGGACGTGGGCCAGCTCTGCAGACTAGGTGCTCATGGTGGGGAGAGGAAAGGGTTGGGGGAGGAAGCGGCAGCCTCTGGCTCCCAGGTGCTGGGTCTCTAGGCACTATTTTTCCATGCGTTTGTTTATTCAGTGAGCACGTATTAACCACCTCCGAAGTGCCAGGATCACTGTCATCACCGGGGCATGCTGACGTCCTGTAGCTACACTTCAGTGCCTCAGTGAGCCTTTTACTCACCTGACTTGGGGAACAGTGGGAGGATTAGGACCTAGAGAGGGCTGACAGAATGCGGTCCACTGGAGAAGGGAATGGCAGACCACTTCAGTATTCTTGCCTTGAGAACCCCATGAACAGTATGAAAAGGCAAAATGATAGGATACTGAAAGAGGAACTCCCCAGGTCAGTAGGTGCCCAATATGCTTCTGGAGATCAGTGGAGAAATAACTCCAGAAAGAATGAAGGGATGGAGCCAAAGCAAAAACAATACCCAGCTGTGGACGTGACTGGTGGTAGAAGCAAGGTCCAATGCTGTAAAGAGCAATACTGCATAGGAACCTGGAATGTTAGGTCCATGAATCAAGGCAAATTGGAAGTGGTCAAACAGGAGATGGCAAGAGTGAACATCAACATTCTAGGAATCAGCAAACTCAAATGGACTGGAATGGGTGAATTTAACTCAGATGACCATTATCTACTACTGTGGGCAAGAATCCCTTAGAAGAAATGGAGTAGCCATCATGGTCAAGGAGAGAGTCCGAAATGCAGTACTTGGATGCAATCTCAAAAATGACAGAATGATCTCTGTTCGTTTCCAAGGCAAACCATTCAATATCACAGTAATCCAAGTCTATGCCCCAACCAGTAACGCTGAAGAAGCTGAAGTTGAACAGTTCTATGAAGACCTACAAGACCTTTTAGAACTAACACCCAAAAAAAATGTCCTTTTCATTATAGGGGACTGGAATGCAAAAGTAGGAAGTCAAGAAACACCTGGACTAACAGGCAAATTTGCCCTTGGAATACGGAATGAAACAGGGCAAAGACTAATAGAGTTTTGCCAAGAAAATGCACTGGTCATAGCAAACACCCTCTTCCAACAACACAAGAGAAGACTCTATACATGGACATCACCAGATGGTCAACACTGAAATCAGATTGATTATATTCTTTGCAGGCAAAGATGGAGAAGCTCTATACAGTCAACAAAAACAAGACCAGGAGCTGACTGTGGCTCAGATCATGAAGTCCTTATTGCCAAATTCAGACTTAAATTGAAGAAAGTAGGGAAAACCACTAGACCATTCAGATATGACCTAAATCAAATCCCTTATGATTATACAGTGAAAGTGAGATTTAGATTTAAGGAACTAGATCTGATAGAGTGCCTGATGAACTATGGCATGAGGTTCATGACACTGTACAGGAGACAGGGATCAAGACCATCCCCATGGAAAAGAAATGCAAAAAAGCAAAATGGCTGTCTGGGGAGGCCTTACAAATAGCTGTGAAAAGAAGGGAAGCAAAAAGCAAAGGAGAAAAGGAAAGATATAAGCATCTGAATGCAGAGTTTCAAAGAATAGCAAGAAGAGATAAGAAAGACTTCCTCAGCGACCAATGCAAAGAAATAGAGAAAAACAACAGAGTGGGAAAGACTAGAGATCTCGTCAAGAAAATTAGAGATACCAAGGGAACATTTCATGCAAATATGGGGTTGATAAAAGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAGGAATACACAGAAGAACTGTACAAAAAAGATCTTCACGACCAAGATAATCACGATGGTGTGATCACTTACCTAGAGCCAGACATCCTGGGATGCGAAGTCAAGTGGGCCTTAGAAAGCATCACTATGAACAAAGCTAGTGGAGGGGATGGAATTCCAGTTGAGCTATTTCAAATCCTGGAAGATAATGCTGTGAAAGTTCTGCACTCAATATGCCAGCAAATTTGGAAAACTCAACAGTGGCCACAGGACTGGAAAAGGTCAGCTTTCATTCCAATCCCAAAGAAAGGCAATGCCTTTCAGAGAATGTTCAAACTACCGCACAATTGCACTCATCTCACACGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATACGTGAATCCTGAACTTCCAGATGTTCAAGCTGGTTTTAGAAAAGGCAGAAGAATCAGAGATCAAATTGCCAACATCCGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGGAAAATTCTTCAAGAGATGGGAATACTAGACCACCTGACCTCCTATTGAGAAACCTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACTTGGAACAAGAGACTGGTTCCAAATAGGAAAAGGAGTATGTTGAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCATGAGAAACACTGGGCTGGAAGAAGCACAAGCTGGAATCAAGATCGCTGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGCAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATTAAAGTAAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAATGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTATCTTTTTGGGTTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAATACGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTGAAAAGCAGAGACATTATTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTCCCAGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGTGCCGAAGAATTAATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGTGCTCTTTGGAAGGAATGATGCTAAAGATGAAACTCCAGTACTTTGGCCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACGGACTTGATGGACTTGAGTCTGAGTGAACTACCGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGGGATTCATGGGGTTGCAAAGAGTTGGACACGACTGCGCAACTCAACTGAACTGATCCAGTTTCCACATCCAGTTGGGCACTGACTCTCGGGTCACTTGTGGGAGGTTTGAGCCTTTAACAAGGCGATGAGGTTAGTAATCCAGACCACTTTGGCTCCTGCCAGGATGTGGGGAGGACTGACTGGCGGCGTGACCCCACGTCTGAAGGGCTTTGAGCCCCCCAGAGCCAGCATGCGCCAGTGTAGTTGTCTCCTGCACAGGACGTGGAGGGCTACTGTCTCCTGTTCTGGTCCCCGCCTCTGCCGGAACAGGGCCCCTGATTCAGCTCTGACGAGCACTGAGCCATAAAGGCTGCTGTGATTGCAAGCTTCACCTGCAGGACATGCATGCAGCTCCCTCGTCGGCCTGAGCTGGCCTTCTCCCCAGCGCACTCTGGGGCTTCATTCTCCCTCGGCTCTGCTCTGTCTGCTGGACAGGCTGGGCCGCCTGCCATGACTTCCTCCCTTTGCTTGGTCCAGGGTTTTCTCTATGTTTATGGGGAGCCAGGAGAGTGCCTCGAGGGAATTTTTTTTTTCCCCTGAAAGAACCTTCAGGTGGATTCCTTTCATTAATCAGAAGTTTGCAGACTGCACGCATAGGTCACACCGTGTACCAGGGCTCATTGGGTGCTTCTTCTCTGATGTTTCCAGAAGGCCTTCAGGTCAGCTTCTCCCTATTCTGGTGAGGCCCACGTTTTGCCAGCCAGAAAAACAGGGCAAGCGCAGGAGCTCGTGCAGGGCTGCCTGACGATTCCGCAGCTAGCGGCATGAAGGCTGTGTGTCTGCTGGTAGCGCTCGCCTCACCAGGGCCCTTTCCTGTGCCTGTAACGCCCTGGCGGTAGTTGTTAGTGAAGGAAGCGCATGGAATAAAGCTAACTGTGGACAGACACTCACTGTAGATTTGGGTTCAGCCAGTGGACACGCTGAAAAGACAGGAGCATACTTTGCAGCACGAGATCGAGTTTCTCTTTTGTGGCAAAGAGAAGACATAATAGAAACTGTCTACTTAGGAAAAGGTTAGGCTCCGAATGGCTTCTTGTAACTCCAAGGTGATATGAGGAGGACAGTGGGTACCACACTGATGTAAAGCTAAGAGAAAACTGGACGTTGTCTGGGAAGCATCTCTGCCCGCATGTGCTGCGTACAGGAGCTTATCGTCACTTGGCATTTTTGGTGACGGTTGTTATTTCTACTCTTCATTTCTGTGTGGTTGCGTGTCTTTTCTTAATTAGCTCCATATTAGGCATTCTAATCTGAGGTGAGCAGCGGGGGGCAGTGAGTGACTGGTTTCCCAGGCTGTCCCTTTGCTGGTTCTCTGAAGAGTCCAGTGGAAAAGGCCTGTGAGCTTGGACACCTCTTTGCTCTGGGCTCACACTAGACCCTTCGCCTGTTTGGGAGCAGTGGTTGGAGAGGATCTAGGAAGGGATTTGTGGCTTCAGTGGTGCTGGGATTAGGTGGGTCCCAGTTGTGACTACTCTGGCAAAACCTAAAGGAATACCCAGAGGAAACCTTTTGAGAGGTTAGAATTCTAAGCCGAATGAAACTTCTTAAGCATAGGCATTAGTCTTATATAGTCTCAGGCTAATAGACTATTTGATGCCTTAAAATAATTTTTGACTGGGTTTCAAGACAGCTCTTAGTAATAGTCTGCCCTACTGGTTGGAGCATATTTCTAGAATTTCTAATGAGAGGAGTGACTAACCAGAAGAGAGAGGGGTGGGGTGGTGAGGGTCTGGAAACTGATCTCATCTGGGCCTGATGAGGAAGCCGGGGAGATTTCGTTTGGCAGAAGCGAAGACATAGTTTGAACAGTTGGGGAGAAAAGAGTTGACACGGGTCTGGGTGCAAAACCAGGGATGGTGGGTGGAAGTTGTAGGGCTGGCATTGTGGCGTCAGTGTCGGGAACGGACTTGATGGCGGTCCGGCAGAGGAGCAGCCGTGGGATCTTCCTTCCACTCGGGAATGTGCAAGCTGAGCCGACACTGACGGTGAGTGGTAGTTAATGCCATCCTGGCTAGAGTTGAAATGTATGCATGTCACTTCCCTGCCTGACAGAGTCAGGCTTCTGTAATGCTGTTATGCAAGACTCCAGGTTCCCGGGGAGATGGGAATGCATTTGGATATGGCGTGAGCTGGCAAGAGCCCCATGCCGTCCCTGGGATAGCTCTGCGGATGTAATGGCATCTTTCTCTCCCCACAG
Seq C2 exon
GCCAATGGCCATGTGTCTCAGGACCAAGAGGAGCCCATCTACCTGGAGCGCACAGCCAGAGCCCCTGCTGAGGACGAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013645:ENSBTAT00000018136:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PD(65.7=33.8),PF102084=Armet=WD(100=50.8)
A:
NA
C2:
PF102084=Armet=PU(12.3=35.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]