RnoINT0126263 @ rn6
Intron Retention
Gene
ENSRNOG00000007596 | Rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:727916]
Coordinates
chr10:70164812-70167838:-
Coord C1 exon
chr10:70167431-70167838
Coord A exon
chr10:70164896-70167430
Coord C2 exon
chr10:70164812-70164895
Length
2535 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCACCTTTCTCTTCCCACAGGCC
3' ss Score
12.29
Exon sequences
Seq C1 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGCTCCAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGCTTCCGAGCCACGGCCTTTCAGCGAGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCATGACATCTCTACTGAAATGTGCCGGGAGAAAGAAGAACTGGTGTTTCTGGTGCTTGGCCAGCAGCCTGTAATTTCTGAGGCGGACAGGACTCGTGCTCCCACCTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCTTGACCCAGCCTCAGAGCAGCACAGTACCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGTGTTAGCCCAGGATCAGGAAACTCAGCAG
Seq A exon
GTAGGAGCCACCATGCAGCCTCTTCTGCTGTGTCTGCCCCAGTATTCTTTTTTTCCTCCCCCACTGCATTGTGGGAATGGGGTGTCAAGTATAATGTCTAGATGGGGTAAAGCCTTTTTGCTTGTTGATTCTAGAAGTAATGCTTTCTGATCATTAGCTCTAGCTTCAGGGATGGTAGGCCTAGTCCATAGCAGCATGCACGGTCTCCACCCTCAGGAAGCCCTGACAGAGAGAGGCTAAGCATGAGACTCTGGCGTTTGTCTGGAGTGGTGGTGTCACACAGATCTGCAGAAGTCACAAGGCTTGAGCACAGAAAGATTAGGACCTAGATCTCTATCTACTGATTACATGCATGCACGTGTACACACACACACACACACACACACACACACACACACACACACACACACTAGCTATAGCACAACCCCACAATTACTGTCTCTGACTCCTTGGTCATCTGGAGCACGTTTTGAGTCTAGAACAATGAAAGAATCCCTTTGGACTTGCTAGTTTGCAGAGACAGCTACCATAGCACGTCTGTGGAGCACGGAGCTGTGAGAACTGGCATCTCCTTTCCCACATAGGACGTGGGTGGCTGTGCTTCTGGTTTATAGTTACCTCCTTTGCCAGGACCGGTCACTCATTCAGCTAAAGGCCAACATGATAACAAAATCTAACTACAAAACTCATTTAACTCTCTGTTGGCTGAAGTCTGTCTCTTCTCCACAGCTGGTCTTTAGTGCTTTCCTGAGCTCTGGCTCTCGCTTAGTTGTTGGATAAGTTTTGTCTCTTGCTATACATTCCTTTTGCTTGGTTTTGGGAGGCACTCTGATGTGTAGTATAGCGAGCAAGGACAGGAACCTGAAGAAGAACTTTTTCATGAAGAACCTTCAGGCAGGTCAGGTATGGTGTTGTGTACTCTGATCTCGGCACTTGGGAGATAGAGGCATGGCAGGATTTTGAGGCTAGCCTCTTCTACACAGTGAGCTCACAGCCAGCCTGGGACTACGTGAGATTCTGTCTCAGAAGAAGAAGAGGGAGGAGAGAATGAACACACCTCCAGGAGAGTCTTCAATGTAGGATTATAAACATTTTGTCACTAACCAGAATTTTCCTGTACCAACAGGTCATGCTGCCCCCTGTGTTATTGGGTCCCTCTCCTGTAGTGTCAGCTTCTGTTCTGATGATACCTGAACTTTGCAAACAGGAAAAACAGGCATGGGGAGTTAAATAGCCTGGGCAAGGCCGTATGTTGCATAAGTCACAGAGAGCTGCATCTAGGATGCAAAGCTAACAGTTCTAGCCCTGCTAGGTTCTGGTTCTGTCCTTCTGCTCTGATGTCCTAGCAGCATTTGCTAGGGAGGGAAGTGTGTGTGATAGGCTGAGTAGGTCAGATAGATGCGAGTTGCAGGTTTTTTCTTTAGCTAGTAGCAGACTGGAAAGATAAGAGTGTTTGCAACGTGGATTCCAGTTGCTCTTTCTAGAAAACTAGAAAACAAAAGACATTCAAAAGCTGTCTACTCAGGAACAAGCCAAGCAAGACCCCAAGGTAATAGCAAGGTGACAGAATGCAGCTGGCCAGCGAGTACCACATCTACACGAAGCTAGGAGGATGGCGGAGGAAGCAGGAGTTGTGGGTGCAGGATGTTGGCTGCATCACCGTATGTGTGGCTTCCATCACTTCAGTGTTCTAAGCTCTGCTCTTTATTTCTATTGTAATTGTGTGCCCTCTTGGCGAATGGCTAGAGCTGTCAGGTCACTTTTGAGTTCCCCAAGTTGTCTCTTCACTGTTCATCCAGGTTCTAGGGGAAAGGCCTGTGAACTCAGCCATGTCTCCTGCTGGGTTCACACAGGCCCTTTGCCTGGAGGCAGCTAAGAGTGGAGAGGAGGAGCTAGGGTAGGGGTTTATGGCAGAAGTGGTTAATAGAGTTAGGAGGTCACAATTCTGAGCAGTCCGATTAAGATGGGCCCTTTTGAGAGTTTTGAGAGGGTAGCGTGCTGAACAGAATGGAACCCAAGCTGAGGCATTTGTGTCCTGTAGTCTGAGGTTATTAAACACACTCAAGCAGCTTCAGAGTATGCCATACCATGTCCTGCTGGTTAGAACACATTTCTAGAATGTAAAATGATCCTGGTCCAGAAGCAGAACCGCAGTAGTGGGTGGAGGCCATGGGGAGGGAAAACGGCATAGTTAAGAGATAATTTGGTAGACTGAAACCTTTCACCTCAACTGTCAAACTGAGCGCAAACTGGTGATGGGTGATGGGTGGTGGGTGATGCCACCCTTACTGCTGGGCAGAACTAGCACATCCTTGTCCTTGGTGCAGCTTTCCATCCATTGAAATCTGTGTGTATTGTCTCTGGCTGTGAGACTTGCTGTTAGAAAGCAGGCATTTGTGGTCCTGCTTTGGGAGCCTTGTTTCTGGAGGGAGACAGAATACATTTTTGGACATTTGTATGAACTGAAAGAGGCCCATGGTTTGTAAGTCACTGGGATATCTCTGTGGATGTGATGGCACCTTTCTCTTCCCACAG
Seq C2 exon
GCCATTGGCCATGTGTCTCAGGACCACGAGGAGCCCATCTTCCTGGAGAGCACAGCCAGAGTACCTCCTGAGGATGAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007596:ENSRNOT00000010015:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.964
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PD(66.7=33.6),PF102084=Armet=WD(100=55.5)
A:
NA
C2:
PF102084=Armet=PU(19.4=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]