RnoEX0075351 @ rn6
Exon Skipping
Gene
ENSRNOG00000007596 | Rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:727916]
Coordinates
chr10:70163790-70167838:-
Coord C1 exon
chr10:70167431-70167838
Coord A exon
chr10:70164812-70164895
Coord C2 exon
chr10:70163790-70164000
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCACCTTTCTCTTCCCACAGGCC
3' ss Score
12.29
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGCTCCAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGCTTCCGAGCCACGGCCTTTCAGCGAGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCATGACATCTCTACTGAAATGTGCCGGGAGAAAGAAGAACTGGTGTTTCTGGTGCTTGGCCAGCAGCCTGTAATTTCTGAGGCGGACAGGACTCGTGCTCCCACCTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCTTGACCCAGCCTCAGAGCAGCACAGTACCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGTGTTAGCCCAGGATCAGGAAACTCAGCAG
Seq A exon
GCCATTGGCCATGTGTCTCAGGACCACGAGGAGCCCATCTTCCTGGAGAGCACAGCCAGAGTACCTCCTGAGGATGAGACCCAG
Seq C2 exon
TCCGTTGACTCAGAGGACAGCTTTGTCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTGCGGCAGCTGAAGGAGATCCTGGCTCGCAACTTCGTCAACTATAAGGGCTGCTGTGAGAAGTGGGAGCTGATGGAGAGGGTGACTCGGCTATACAAGGATCAGAAAGGACTCCAGCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007596_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.964 C2=0.178
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PD(66.7=33.6),PF102084=Armet=WD(100=55.5)
A:
PF102084=Armet=PU(19.4=64.3)
C2:
PF102084=Armet=FE(75.3=100)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACAAGTCACCTCTGTG
R:
GAAGTTGCGAGCCAGGATCTC
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]