GgaEX0002747 @ galGal4
Exon Skipping
Gene
ENSGALG00000002225 | RFFL
Description
E3 ubiquitin-protein ligase rififylin [Source:RefSeq peptide;Acc:NP_001025882]
Coordinates
chr19:4496470-4498784:+
Coord C1 exon
chr19:4496470-4496874
Coord A exon
chr19:4498164-4498247
Coord C2 exon
chr19:4498577-4498784
Length
84 bp
Sequences
Splice sites
3' ss Seq
AGCTTTATTTCCTCTTTTAGGGA
3' ss Score
10.53
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CATATCTGCTTGGACTGTAAGAAGAACTTCTGCACGTCCTGTTCAAGCCAGCCCGAAGGTGGTCCCCTGCTCTGCCACCTCTGTCAGCGTGTCCGAGCCACAGCTTTTCAGCGGGAAGAGCTGATCAAGATGAAGGTGAAGGATCTGCGAGACTACTTGGCGCTCCGAGAGATCTCCACCGAGCTGTGCCGTGAGAAGGAGGACCTGGTGTTCCTGGTTCTTGGCCACCAACCACCGCTTAGCCAGGAGGAACAGATGAGAACAAACCCATTTAATACTAGTGCCTCTGGACAGCAAGACTTTGTGATTCTCCCACCACCCAGCACAGCCTCTCCTACCTCACACGACGCATCCCCGGTGTCTGCAGATCCCACCTCAAGCTCACTAGCTCAGGAACACCGAGAG
Seq A exon
GGAATTGGGTATGTGCCTCCAAGCCAAGTTGGTATGACAGGAGTTGAGAATGCAGCAGAAGCACCAACAGAGGAGGAGACACAG
Seq C2 exon
TCTACTGACTCAGAAGATAACCTGGTGCACGGGAGGAAGGCTTCTCTTTCTGATCTGACAAGCATTGGAGACATCAGTGAGTTGTCTGTGCGACAGCTGAAGGAAATTCTTGCTCGCAACTTTGTCAACTACAAAGGCTGCTGTGAGAAGTGGGAGCTGCTAGAGAGGGTGACCCGTCTTTATAAAGAGAAAGACCTTCAGCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002225_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.444 A=1.000 C2=0.200
Domain overlap (PFAM):
C1:
PF054587=Siva=PD(45.7=31.9),PF0231811=FYVE_2=PD(64.2=31.9)
A:
PF102084=Armet=PU(1.3=3.6)
C2:
PF102084=Armet=FE(89.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGTGCCTCTGGACAGCAA
R:
AAAGAGAAGCCTTCCTCCCGT
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]