MmuEX0039508 @ mm9
Exon Skipping
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82623510-82626312:-
Coord C1 exon
chr11:82625902-82626312
Coord A exon
chr11:82624530-82624613
Coord C2 exon
chr11:82623510-82623720
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCACCTTTCTCTTCCCACAGGCC
3' ss Score
12.29
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGTTCGAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGGTTCCGAGCCACGGCCTTCCAGCGGGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCACGACATCTCTACGGAAATGTGCCGGGAGAAAGAGGAGCTGGTGTTCCTGGTGCTTGGCCAGCAGCCTGTAATTTCTGAGGCGGACAGGACTCGTGTTCCCCACTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCCTGACCCAGCCTCAAACCAGCACAGTGCCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGTCCCCTTAGCCCAGGATCAGGAAACTCAGCAG
Seq A exon
GCCGTTGGCCATGTGTCTCAGGACCACGAGGAGCCCATCTTCCCGGAGAGCACAGCCAGAGTACCTACTGAGGATGAGACCCAG
Seq C2 exon
TCCGTTGACTCAGAGGACAGCTTCGTCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTACGGCAGCTGAAGGAGATCCTGGCTCGTAACTTTGTCAACTATAAGGGCTGCTGCGAGAAGTGGGAGCTGATGGAGAGGGTGACTCGGCTGTACAAGGATCAGAAAGGACTCCAGCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.372 A=1.000 C2=0.191
Domain overlap (PFAM):
C1:
PF0136316=FYVE=PD(73.3=46.0),PF102084=Armet=WD(100=55.5),PF0203722=SAP=WD(100=15.3)
A:
PF102084=Armet=PU(26.5=96.4)
C2:
PF102084=Armet=PU(92.3=84.5)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTAGCCCAGGATCAGGAA
R:
TCTCGCAGCAGCCCTTATAGT
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types