RnoINT0126264 @ rn6
Intron Retention
Gene
ENSRNOG00000007596 | Rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:727916]
Coordinates
chr10:70163790-70164895:-
Coord C1 exon
chr10:70164812-70164895
Coord A exon
chr10:70164001-70164811
Coord C2 exon
chr10:70163790-70164000
Length
811 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCGCATCTTTGCCATTGCAGTCC
3' ss Score
6.92
Exon sequences
Seq C1 exon
GCCATTGGCCATGTGTCTCAGGACCACGAGGAGCCCATCTTCCTGGAGAGCACAGCCAGAGTACCTCCTGAGGATGAGACCCAG
Seq A exon
GTGGGGCCTCTGCTCGCTCTGCACCTCACCTTTGTTCTCTGCCTGGTCTTGGAAGTTCCCAGGAGCAGGCAGGGTCAGTCTGTAAGGATAGTCGTGAAGTCCTTGAGTCCAGCAGTACTATCTCAGATTAACCTGTGTTGCTGTCAGTCTGAGTCTATAGTAGAGGCTGGTGGACCTCCTGGCCCATCCTGTGTTCCCAGTCCTTTGACTCTCTAAGAGCTGCCAGAGGATACACTGTGGGTAATGCTGTAAAAGTCTTGTTCTTGTCCTGTGTGTCTAGGGTGCATGCAGTAGCCCCTGTTGGAGAAGGAGGGAAGATGACGAGGCTCTTGGGCCTCAGCCATACAAGGGACCAGTACAGAGCTTCAGTGAGCCCATGTATGGAGTCCTGCCAGGGCGCCAGTACTGAGAAGAGGCAGTACCACACCTGGGGTTTCCTCAGGAACTCTGAGTGGCATGACAATTGTCTCTCTCCTTTGTGGAAGGGTAACAGGTTCAGGATGGTAAACAACTTGAAAAATACTGTCAGGTATTTAGTGGAGGCAGCAGCATTGAGAATCAGCGCCCTCTGGCCAACTAACTAGTGTGCCTTTATGCATAGTACTGATATGCCAGTGTGTGGCTGTTCTCACAAAACACATGGTGGGGCAGGGGAAGACCAGGCTATTTTGCTGAGTCAAGCAGGTACCCTCTGTTTCATGTTCCTTGAGGTTGGTCAACAAAATGCATTCTGATAAGTGCTCTGGGGTCCTTGAAGAGAGCTTGAAGGGCACAAGAGCTGAACCACCTGATCGCATCTTTGCCATTGCAG
Seq C2 exon
TCCGTTGACTCAGAGGACAGCTTTGTCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTGCGGCAGCTGAAGGAGATCCTGGCTCGCAACTTCGTCAACTATAAGGGCTGCTGTGAGAAGTGGGAGCTGATGGAGAGGGTGACTCGGCTATACAAGGATCAGAAAGGACTCCAGCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007596:ENSRNOT00000010015:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.178
Domain overlap (PFAM):
C1:
PF102084=Armet=PU(19.4=64.3)
A:
NA
C2:
PF102084=Armet=FE(75.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGGCCATGTGTCTCAG
R:
CAGGTGCTGGAGTCCTTTCTG
Band lengths:
294-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]