MmuINT0133906 @ mm9
Intron Retention
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82623510-82624613:-
Coord C1 exon
chr11:82624530-82624613
Coord A exon
chr11:82623721-82624529
Coord C2 exon
chr11:82623510-82623720
Length
809 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCTCATCTTTGCCATTGCAGTCC
3' ss Score
8.23
Exon sequences
Seq C1 exon
GCCGTTGGCCATGTGTCTCAGGACCACGAGGAGCCCATCTTCCCGGAGAGCACAGCCAGAGTACCTACTGAGGATGAGACCCAG
Seq A exon
GTGGGGCCTCTGCTCGGGCTGTACTTGACCTTGTTTCTTTGCCTGGTCTTCTTGGGAAGTTCCGAGGAGCCTCAGCCGACTCGGGTGCAACAGGAGGGTCAGTCTGGAAGGACAGTCCTGAAGTCCTTGAGTCCAGTGGTACCACTCCAGATTAACCTTTGTTGCCGTCAGTGTGAGCAGGCAGATCTGAGGCTACAATAGAGGCTGGGGAACCTGCGGGCCCAGGCTGAGTTCCAGTCCTTTGGCTTTCTAAGAGCTGCCAGAGGCTACCCTATGGGTGCTGCTGTGACAGCCCTGTCACTGTCCTGTGGTCTGGGGTGCAGTAACCACTGTTGGGGAAGGAAGGAAGATGATGAGGCTTTCAGGCCTCAGCCACACAAGGGCGCCCAGTACAGAGCACGGTTCTGACGGGCCAGAGAGCTTCGGTGAGTCCATGCATGGAGTCCTGCCAGGGAGTCAGTACTGAGGAGAGGCAGTGCCACATCTGGGGTTTCCTCGGGAACCCTGAGTGGCAGGACAGTTGTCTTCTTTGAGGAAGGGTAACTGGTTCAGGATGGTAAACAACTTGAAAAATACTGTCCAGTATTTAGTGGAGGCAGCGGCATTGAGAATCGGGGCCCTCTGGCCAACTAGTGCGCCCTGTATGCATTTTATTGACATGTCAGTGTGTGGCTGTCTGCATAAAGTACATGACGGGGCAGGCAAAGACCAGCCTGTCAACAAAGTGCATTCTGATGAGTGCCCTGGGTTCCTTGAGAGCTTGCAGGACCCAAGAGCTGAACCACCTCATCTCATCTTTGCCATTGCAG
Seq C2 exon
TCCGTTGACTCAGAGGACAGCTTCGTCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTACGGCAGCTGAAGGAGATCCTGGCTCGTAACTTTGTCAACTATAAGGGCTGCTGCGAGAAGTGGGAGCTGATGGAGAGGGTGACTCGGCTGTACAAGGATCAGAAAGGACTCCAGCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696-Rffl:NM_001164569:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF102084=Armet=PU(26.5=96.4)
A:
NA
C2:
PF102084=Armet=PU(92.3=84.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTGGCCATGTGTCTC
R:
CAGGTGCTGGAGTCCTTTCTG
Band lengths:
294-1103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: