MmuINT1029758 @ mm10
Intron Retention
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82810008-82811111:-
Coord C1 exon
chr11:82811028-82811111
Coord A exon
chr11:82810219-82811027
Coord C2 exon
chr11:82810008-82810218
Length
809 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCTCATCTTTGCCATTGCAGTCC
3' ss Score
8.23
Exon sequences
Seq C1 exon
GCCGTTGGCCATGTGTCTCAGGACCACGAGGAGCCCATCTTCCCGGAGAGCACAGCCAGAGTACCTACTGAGGATGAGACCCAG
Seq A exon
GTGGGGCCTCTGCTCGGGCTGTACTTGACCTTGTTTCTTTGCCTGGTCTTCTTGGGAAGTTCCGAGGAGCCTCAGCCGACTCGGGTGCAACAGGAGGGTCAGTCTGGAAGGACAGTCCTGAAGTCCTTGAGTCCAGTGGTACCACTCCAGATTAACCTTTGTTGCCGTCAGTGTGAGCAGGCAGATCTGAGGCTACAATAGAGGCTGGGGAACCTGCGGGCCCAGGCTGAGTTCCAGTCCTTTGGCTTTCTAAGAGCTGCCAGAGGCTACCCTATGGGTGCTGCTGTGACAGCCCTGTCACTGTCCTGTGGTCTGGGGTGCAGTAACCACTGTTGGGGAAGGAAGGAAGATGATGAGGCTTTCAGGCCTCAGCCACACAAGGGCGCCCAGTACAGAGCACGGTTCTGACGGGCCAGAGAGCTTCGGTGAGTCCATGCATGGAGTCCTGCCAGGGAGTCAGTACTGAGGAGAGGCAGTGCCACATCTGGGGTTTCCTCGGGAACCCTGAGTGGCAGGACAGTTGTCTTCTTTGAGGAAGGGTAACTGGTTCAGGATGGTAAACAACTTGAAAAATACTGTCCAGTATTTAGTGGAGGCAGCGGCATTGAGAATCGGGGCCCTCTGGCCAACTAGTGCGCCCTGTATGCATTTTATTGACATGTCAGTGTGTGGCTGTCTGCATAAAGTACATGACGGGGCAGGCAAAGACCAGCCTGTCAACAAAGTGCATTCTGATGAGTGCCCTGGGTTCCTTGAGAGCTTGCAGGACCCAAGAGCTGAACCACCTCATCTCATCTTTGCCATTGCAG
Seq C2 exon
TCCGTTGACTCAGAGGACAGCTTCGTCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTACGGCAGCTGAAGGAGATCCTGGCTCGTAACTTTGTCAACTATAAGGGCTGCTGCGAGAAGTGGGAGCTGATGGAGAGGGTGACTCGGCTGTACAAGGATCAGAAAGGACTCCAGCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696:ENSMUST00000074515:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.202
Domain overlap (PFAM):
C1:
PF102084=Armet=PU(26.5=96.4)
A:
NA
C2:
PF102084=Armet=FE(68.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTGGCCATGTGTCTC
R:
CAGGTGCTGGAGTCCTTTCTG
Band lengths:
294-1103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types