BtaINT0124270 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030593 | RFTN1
Description
raftlin, lipid raft linker 1 [Source:HGNC Symbol;Acc:HGNC:30278]
Coordinates
chr1:155176264-155183697:-
Coord C1 exon
chr1:155183616-155183697
Coord A exon
chr1:155177012-155183615
Coord C2 exon
chr1:155176264-155177011
Length
6604 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCATCTCCCCCGATCTCTAGTTT
3' ss Score
6.46
Exon sequences
Seq C1 exon
GGAAGGGACTGTGTCCACCAAGCAGGTCGTCTTTCTCCAGAGGCCGTGTCTACCTCAGAAGGTCAAGAAGAAGGAATCGAAG
Seq A exon
GTGAGTGACCTTGCCGCCCTCCTGGGCCTGGCTCCGCGGAGCCCTGGGGACCCCTGAGCCCCCTCAGCAAAATGAGCCACGTCACCTGCAGGTGGGGGCGCTGGGGGCCGTGTGGCCAGCCCTCTCCTGCGAGGGTGCTTGGGCAGGCAGGGTTTGCGTTCCGAGGAAAGAAGTGGGGGGTGCTGGGAGGCGGCTGCAGCCTGGGCAGGGGGCCCACGCCCCGTTCCTCTGCATCTTCATCTCCGATCGAGATGGCCGGAGCTCCAGCCGGCGCCCCATCCCTGGAGCCGTGGGAGGTTTGGAGATCCTGGCAGAGAGAACCTGCCAAAACGCCTTCCCCGAAGGGCCCGCCCCGCAGGGCTGAGCGGCCAGGGCTGGTGTGGACGCAGGGCATCGCCCCTGCGGAGCGAGTCCTAGAGCCTGGTCCTGCCCCACCCTCCTGGGACGTCACCCGAACCCTCCTGGGAGCGCATTCTTCCTGAGACTGGGGGTGTACCCCTTGCTTCCCTGAGGCGGATCCCAGGGTCTTTACAGTGGCCGCACACCCCTGGCTTTGCCCCCGAGGGTGCTCCTCCCAGGCGACCCTCGGGGCCGCGCGGCCGTGCCCTGGGGCCAGCTCGCTGTCCCTGTGACGGGCACGGCCAGGCCGTGGGGCAGAGCCCGCTAGACACCCCCACCCTTCCCCTGGCACCACCCCCCAGGCCTCCTCGCGTGCTGGGGATGGGGGCCGTGAACAGGTTGGCCGTGAACCGCCGCCCCTCCGCAGCCAACACGTCGGGGGCGGGGCGGGGTGCGCGCTGGTAGGAGGGACCCCGACGGGCCGGCCGGGGTTCTGGTGCGCGCTGTGCCGTCGCCGAGGGAAGGGCCGGAGGAAACCTGGGCGGCGGGGTTCAGGACGGGGCGCAGGGCCGCTGTACGAACGTCCAGCAAGAAGGTCCGGAGTCCGGAGGGCGGCGGCCGGCTCTGCCGGGTCGGGAGGAGCGCCCCCGGGCAGCCCGCGCCCTCCCGGGGGCTCGCTCAGCCCTGCGCCTCCCGGGCGCGGCTGGCAGTGGGCACTGCCCTCGCCGTGACGTGGGGCGGCGCCCGGAGGGTGGCCTGTACCGGCCCCGGTCCCCGGCCCGGTCCTAAGCCGGCGGTTCCCTGTACGGCTCCCTGGAGACCCCGGGCGCCCTCAACTCGAGGCCCGCGGCGCTGACCCCGGCCGCGCCCTCCAGCCCGGGAAGCGCCTTGTTCTCTCTGCCCCACCACGCCCGCCTGGTTTCCCACCCGCTGCCTCATCTGGAGCCCTGTGTCTCCCCACTTCCTCTTCCGTAGAGAATCTCCTGCACCCCCAGACCTAGACGGCCCCCTCCCTACCCCTGAGTCGCCGAGTCTCCCCTCGGAGCGGCCAGCCTCAGCCTCTCCTTCCCTGTAGCTGCTGGTGACCCCGCACCCTTCCGCACCAGGAGGGCCGGCCCTTCGCGGGCCCTGGAGCTCACCTGGGGCCTCCGTCTCCTCCCGCCACCGCCAGTCTGTCCTGAAGGCATGTCTAGCTTTAGGTCCTTGACCCTCTGGAACCCCCTCTCCCATTATCACCTGTCTGGACTACCCTCATCTCCCGATGACAGGCCTCCCTTTCCAGTGTGTTTTCCACTCAGAACCAAAGTGACCTTCTACAAAGAGCAAATGGAGTCGTGTGCTTCTAAAGCTTTGTGTTTTTCAAGATAAAGGTGGGAGCCTTTACTGGGGTCCACATGGCCCTGTGGGGTCTCCCCCAACCCCCTGCCCTCCGGCCCATCTGATGCATCTCAGCCACCCTGGCCTGCATGCTCTCTTGGATTCCTCGCTGCCACAGGGCCTTTGCTTGGGCGTTTCCTGCATCTGGGATACTTTCTTCCTTTGTATTTTCTCAGGACAGCGTTCTCTCCCTTTAGACCAAGCCAGGCTCTTCTGCGATTTACCGTGAAGAACCATGTTCCTCTCCTCTCTGTTCCTGAGTATTTGTGATCAGTAGCTTATCCTCCCCAGTAGAATTGGACAGGAACTCTCTGAGATCACACCCTTTCTGTCCGCACTGCTGTATGCCCGGCCCCTGGCTTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCTGACTCTTTGCAACCCTATGAATCGCAGCATGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACCCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAGCCATCTCATCCTGTCGTCTCCTTCTCCTCCTGTCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTTTTCGCATCAGGTGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCTTTCTTCATAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCTTTGACTAGATGGACCTTTGTTGGCAAAGTAATATCTCTGCTTTTCAATATGCTATCTAGGTTGGTCATAACTTTCCATCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCCCAGAAATAGTCTGACACTGTTTCCACTGTTTCCCCATCTAACTGCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTTTTTAGTTCTTCTTCACTATCTGCCATAAGGGTGGTATCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCGTTTCTCATGATGTGCTCTGCAGATAAGTTAAATAAGCAGGCTTTGAGTTAGTACTCAGCAAACACTTGTTGAACCAGCGAATGAACAATCAAACTGCTGGGCCCAGGACGTGCGTGGTGTGTGTCGCACTGACGTTTAAGGAAAGAGTGCAAAATTCAGACGTCAGGGATGCAGCATATTTAGTCCTCTTTTAATCAGCCAAGGGGATGAAATTCTCCAAACAGGACTTTCAGTATTTGAAAGAAACCTCTTTGTTCATCTGTGATAGTGGCTTTCAGAACAAATATTAACTTCCTTTGAAAGTAAGAGGTGCTTTCTGCAACCCGGGAGACATCTGTCTTCAGCTAAGCTACCGAAGTGGAGGCAGATACAGTCAGGTTTTAAAACGTGTGAATTCAATCCACGAGCCCTGCTGACTTGGAACTCTGGACATGTGCACACTGCTGTAAAGAGGACTTTCCCCTTTCTGCACTTATTTTTGGCACAGACAGCTAGTCGGGGTTTTCTCGGTTTCCACGCTGGCTGCACACCCTCACCCCACTTGTGCCCTGGCCTGGGAAGGCCCGTCCACCCCGCTGCGCCTGCAGCGGCTGCTCTCTTGTGTTGAGAGACTCGCCCTGGAACCGCTCAGACACTCTGTGTCCTCCAGCCTGGCGGCCTGCCTCTGGGTGGATGCCGCTGACCTCTGCTCAGAGCCACCCCGCGGCAAGCTCTCCCGCCTCAGGGTCTGAAATACATACCACCCACCCTTGGACAGAGGTTAATCCGAGTGTAATTCAGAGTGAGCCTCTCATATCCGAGGTTCCCTGAATCCAAGGATGGAAGCAACCACTCACCTCGCAGCACTGGTTTTTACTGTTTCAAGCCACCTGCGTCTCAGGGGACCCACGTGGTCCAGGGGCCAATCGTCCTTCTGTTGTTCCTTCAAGACTGTGACTGTCCCGAGCACAGCAGTAAGGGGACCTGCGAGTGAGGCTGGAGGAGGAGGCCCTCCTGCGGATGCTGGGCTGGGGCTGATGGGGCACGTGGAGGGGTTGGGGGAGGCTGTTTCCCACAGTGAACTGGTGGTGCTGGTCTTAGCTGTGTGTTCTCACTCTGTGACCCATGAACCTGCTGAATCGGCATCACCAGGGAGCTTGTGTGAAGTGCCAGCCTCTGTCCCCTCCCCAGGCCCCCTGATCAGAAACCCCGGGATAGGGTGGGGGCCCTGTGTCTGAAGGCGTCCCCCAGGTGATCCTGAATGCCTGCCAAGTCTGAGAGCCAGTGTCTCAGCTGAGTAGTTTAGGGCCCCTTTCCAGGCTCACCGTGTGTATCTCCATTCAAATTTTATCATTATTGATTTTTTAAAAATAGGCCTGTCAGGGTCTGTTCAATGTAGATGTGTTTTTTTTAATCAGACACACAGAAGCGTCTTTCACAGCAGTTAAATCTGAACTTCCATTAGCTGATCAGTTGGTTTCATGCATCCAGCCTTCATCTAGCAGATTCTGTCCTGAGGTCACGAAGTCTGAAAGCTGAGGCACACACGGGCGGGCTGAGCTATTCCAAAGGTGCGTGGCGTCTTCCCTGGCTTCCTTCCAGAATGTGAGTCTGAAACCTTTTACCCACCAAGAAGGAGCAGACGGAAGATTAGTGTAGAGTCAGAGAAACCTGTGTTTGAATTTCAGCTCTGCTGTTTTCTAGCTGTGTGACCTTGGGAGAGTTAACGTCACCTCTCGGAACCAGTACATGCTCATCATAAAATGATGCCAACAGTTCCTAGTGAGAGCACTGCTTTGGGAATTCAGGGGAAGGGAAACCTTGTCTCAGCGTGGGACACTCAGAACATTTAGCTTTTAGATTCTAGAGACCCTGAGTTTCAGCCACAGCTACTTCCCTGCTTCGTGAGAGTGCTCCCTGCAAAGGAGAGGGGGAAAGGGGAGGACTCCAGACACAGCCTCCAGGTGACCCGGCTGCGGCCCCAGAACAGCTGTGGTGGGCTGGGGACTCCGAGGAGCTTGGGGAGTCGGTGACATCACCACCCTCCATCTAAGGACAGAGAGAATGGTGCCGTCCTTGAAGGCGTTTGGCTTGGCAGAGTTTTCCGAAGGACAGAAAAACACGGGTCGGAGTCGTTTGCATCCAGCTCGGCGTGGACAGCCCCAAATCCCCCTCCGCCCAGCAGCCCAGGCAGGGCCTGGAGAGAGTGAGCGGAGCGCTCCCCGCAGGCCCAGCCCGGCTGTGTCCTCTGTCGTGTTGTATCGGGAGGGCGGTGCAGCGTGATTCTCTGCGGGAATCCGGATGCGGTTGGTGTACGGGGAACCACGCGTCTGCTGTTCATTTAGCAAGAGCAGCCTTTTCGAGGACAAGGGGTTCGCACTGAGACTCGCCAGGGTCTGCCACAGCTAAGAGATCCTGCGTGCCGCGGCAGAGACCCAGCACAGCCAGATACATGCATGAATAATTTAAGAAGAAAAGAGCCAGGGTCCAGGGTGGACTCTGGCCCAGGGGGATGGGCGCGGCCAGGTGCACCAGCCGCCTGCAGGGGGCGCTGGGAGTGGGCCAGCGGGCCCCCGCCCCACTGCGGGGGAGTGGGCCCCCAACTCACCATCCACCAGCCGCCTGCAGGGGGCGCTGGGAGTGGGGCCAGCGGGCCCCCACCCCACTGCGGGGGAGTGGGCCCCCAACTCACCATCCACTGCAGGCTGAGTGGGTCCCCGGGGTGACTCACCCCACCCCGGGGCTGTGCACCAGTCCAGGGGGCGAGGGCAGCTCTTCTGGAGATTACTCCCTTGCCTGAGGACAGACAGCTACCAAATGCCAGAACCGGGGCCTGAACCGGGGTCTTGGCCGCCGCACCGCCTGTGGTGCTGTGTCGCCTTATTTGGGGCCTTTCAGCCTAAGCAGTCTCACCAGTTTTGTTTTGACAAAAATACAATTTCCTCCAACATCTCTCAGAGCTGACTGGCTCTCAGCTCGCTGTATAGGCCAGCTTAACTGGCCTTTTTGTAAAACCATGCAGAATGAAGAGACTCTTGACTATTTGGAGACACCCATTAAAAAAAACTCCTCCGTGTGGCCTGGAAGTAAAACGCAGCTGCAGCAGCACATGAGGCAGCAGTAGTGAACGATGGCCGCTGGTACCCAGGAGCCGTGCAGGGTCAGTCCGTGCTGAGGTCAGAGGTCCTGGTCCCACATGGTGGTCATGGGGCCCCAAGATGCCTGCTGCAGTCTCGGCTGAAGTGGGCACCTTCGGGGTGGGATCTGGGGGACCACTCCACCTGCAGAGGGGGTCCATTGTTGAAAGCTCGTGGCTTGGGTAGGAAAAGCTCAAACTACTCTCCAACCTGAGGGCAGTCTGTCAGTCACTGTACGAGAGAAACCCCCAAAAGGAGTGTCTAGGGGAAACCCAGCCAGTATTGTCGGGGAACTTGGTGTATCAGCACCGCCCCTCCCAGGCCTTTGGTATGGGGCCCTCTCCCTGGAAATTCACCCCTAGAGTCCACGCCGTGGCAGGAACTGCCAGCTCCCAGTGGGTGCGAGGTTTGGGCTGTGGTTGGGGAATAGCGGGCCTTGTGTGTCTCGCTGCCAGACGTGGGTGTGAACACAGAACACGTGTCCAGGGACGATCCAGGGTCACGGAAGCAGCGTGTATTTATCTCCCATCTCCCCCGATCTCTAG
Seq C2 exon
TTTCAGTGGCGATTCTCCCGAGACGAGATGCGTAACAGGCCGACGAGGAAATCCAAAGGGAAATTCTGTGTCAGGGGCAAGCGACAAGCCGAAGAAAGCGAGAAGAACCCAGAAGACCAGCTTCCCAGAGTGGGAGACGCGGGGGGCCATGTGCCCGGGCGGGAGGACTGGGCGGAGGGCCCCGCGGAGAAGCCGCGTCCAGACGGCCAGCCGTGTGTGGAGGGCGAGGCTGTGCAGAACGGCCCCTCAGGCCGCAGCCCGGCCCCGGCGGAGGGCAGCGTGGGGCTCACTGGCCCCGAGCCTGGAGAGGATGCTGGCGTGGAGGTGGCTCCAGGGCCCGCGGCAGCCGAGCACCCCTGAGCCTCGCTGGGCCGTGGGCTGGGGGCTCGTGCGCCCTGGTGTGGCACGTTGCCTTTGGCTTGGCGCGACCCCTCCTGGTGAGCTAATGAGCCACCCGAGGAGGGCTGGGCCCCGGCATTGCTGGTTTCTGCACATCCTTTTGAGACGTGTCCTGGGCCCCAGTGTTAGAACCCACGAGGACTGGTCGCTCCTAGACCTCGGGGCTAGGAGTCCAGCCCCGACCCTACGGCTCCTGGGAGGGGCTGGGCCACCCAGGGCCTCCAGGGGCCCCTCAGGCCAAACTCCGGGTCAAGCCTGGCTGCCAGTCAAGGCCGACATGGTCATCGCCCCCACCCCCAGCCCCGAGATGGGGAGGTCCAGCCCCTGCTGTTGGTGCAGCTGCTGGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030593:ENSBTAT00000043219:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(29.3=100)
A:
NA
C2:
PF152501=Raftlin=PD(42.4=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development