BtaINT0124435 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019630 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:HGNC:30281]
Coordinates
chr16:66412080-66415279:+
Coord C1 exon
chr16:66412080-66412169
Coord A exon
chr16:66412170-66415192
Coord C2 exon
chr16:66415193-66415279
Length
3023 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGG
5' ss Score
6.63
3' ss Seq
TTCTTGTGCTTGCTCTTCAGGGT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GAAGGAACCTCGAAATTTGCAAACCTGGACAGCAGCGTGAAAGAGAACCAGAAGCGGACCCAGAGGCGGCTTCAGCTCCAGAAGGACATG
Seq A exon
GTATGGAAAGCCTTGGGTCTCCCCGAGGGCCAGCCAGGGAGCCACCCCATGTGGGTGGCAGGGCTCCCGCTTGGCACCAGAACCTTCCGTCTGTGGGGTGCCCCTGCTCCCAAAAAAGTTCTCGTGCTCTTTACCTCATCTGTCCTCAGCAGCCCTGGGAGTTATCGAGGCAAGCTCTTCTCACTCCCACTTGACCCAGCAGGAAATAGTTTGGTCCAAGAGTCCCAGATCGCGTTTGTTTTCTGGAAATTTTTTTTTTTTTTTTTCTGGAAGTGAGGGAAAGTCTGTGGCAGGTAGGCTTCTGTCCCTTATACTGTCTTATTTTATCCACTTCTGTACTTATCCACTTCTGTACTTAGGAGCTTGAGACCTGAGACCTCCTGCAATGCCTACTGTAATCAGCTTTTTTTCCCCTTTTGGCCATGCTACACAGCACACGGGATCTTAGTTCCCTGATCAGGGATCGAGCTCGTGGCCCCTGCGTTGGAAGCACAGAGTCTTAACCACTGGACCCCAGGGAAGTCTCAACTGTTTTCAAAGTCCCAACTTTGAACACACAGTAGCTCCAGGACCTGGTTGTTGGGGAAAGAGAGTGTCAGCTCCCAGAACTTGGTCCTTGTACTCAGAGATCTTTTCATTTGTTCCAAACCCTCTAGTCATTTTCTGGATCTCCTCACTGACACCACGTACTAACCAAATCTTTCTGGTTTTTTGGTATTCAAAGGAGCATCGTACCTCCTTCCTTAAGACTAAAAGATAACTATTGACATCACTGGCTTTATTTTTAAAACTCTCCTAACTTTGAGCATAGAAGGGGAAAACCAGAGAGACCAGATTGGAGACTGACAAACTCTTAAATATTTTCATCCCTGCTTGAAGAAGACTTTTCTTCTTCTTTGAAAGCCTGATCATAAATCAGAAATGTTTTTGAGTGATGGGCCTCTTCTGTAACATAAAGCCTGTAGAATATTCACAGCACTTCAAACATTTTTGGTGGTTCAAAGACAAGTTAAAAATAGCTGTTAAGAGAGAGATTATTTTGGTTCAGGATGAGACCTTGTACACATAATAGGGAAGGACAAACTGCAGCTGACAGTGAGCTCTTGAAGGACAAAACCTGCCTTGGTGTGAGCCTCACGAAGCAGCCCTGACCAAGGAGACAGCTGGCCACATGCACATCAGGCCGCCTGGTTTCACCCTGGCGGAGGCTTTGTGTTCTTGCTAGAATTTCCATAAGTGCCTTAATGGAGTTTAGGATAAGGTGCGTCCATGGAAGCCCCCTTTTATTTTCTCTTCAAAATAGTGCCTTGGTGGCCTTGTGGAGGATAGAAATGATTTCCAAGGAGATTTGGTGAAATTAATCTAGTACGTATATACCTGGAGAAGGGAATGGCTACTCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGATGGGCTACAGTCCATGGGGTGGCAAAGAGTCGGACACAGCTGAGTGACTAACACTCACAATTTCATATACCTGCAGTGGAATTGCTTCTACCTTTATTTTCGAGGGAATTTTTTTTTTTTCTTCAGTTGGAGGATAATTGTTTCCAGCTATGCGTACGCATACCTCTCCTCCCTCTCGAGCCTCCCTCCCACCCCACATCCCACCCCTCTAGAGCTTCCCAGCTGGGCTCCCTGTGCTCCAGAGCAGCTTCCCAGCAGCCATCTGTTCTGCACATGGCAGCGTATGTATGTCAGTGCTGCTTTCAGTCTGTCCCACCCTCTTCTTCCCTGCTGTGTCCACAGCTCCGTTCTCCACGTCTGAGTCTCTCTTCCTGCCCTGCAAATAGGTTCATCGGTACCATTGTCCAGATTTCATACGTATGCGTTAATATACGATACTTGTTTTTCTCCTTCTGACTTACTTTACTCGTATGACAGACTCTAGGTTCATCCGCATCACCACACATTTAAATAAACTTTTAATTTTAGAAGTTAGAGAGAAGTTCCAGATAATACATAGAGTTTCTCCGCACCCCTCACCCTTCCACTCCCACCCCAGTTAACATCTGTAACCGTGGCACACCTGGCAATACTAGGATGTCGACATGGGCATCCTGCTGCTCACTGAAAGCCAGACTTGACTTGGATTCACCAGTTTCCCACCGGCATCATCTTTCTGTCCCAGGATCTAATCCAGGGTGCCCCACGGCATGTAGTTGTCAGCCTGGTCCCCTCTGCTCTGTGACGGTTTCTGAGTCTTCCTCTTTAGGAAGACTGTTCCAGTGTCCTGAGACTGTCCTGCAGCCAGGGGTGTCTGTTGTTTTCCTAGTGATTAGACTGAGGTTAAGGGTCTGGAGAGGAGTATCACAGATGTGAAGTGTCTTCTCATCCTATCAAGGAATAAATGGCATCAGTGTGACACGGATGTCACTGGTGATTTTAGCCTTCATCACCTGGGTAAGGTAGAGTTTGGCAAGTTTTCTAGTTTAAAGGTACTGTTTTCCCCTTTCCCTCCTGTTTTCTTCAGAACTGAGTCACCAAGCCACTTTATAGTGATACCACAGCTTCCTGTGGGCACACTCCCGCAGTGGGCTGCAGCCACCCCTCTGCCTGGTGAGGCCGTCCTTCCCAGGGCTGTTCTGAACCACCGGGGGTGTCCACACACTGTGAGAGAGAACAGAGGTCCCTCTGACCTTGTGTCGGCAATGTGCGAACCTCAATCCACCTGAAGCATCTCCTGCCTTCGAGGCTTGGTTTTCATGACTTCGAAAGTTACCTTGGTGATGGAATTCCCAGTCAATTCATAAAGGAATTTAAAATTTTTCATTCATAGAGGTTAGCACTAGTGGCCTTAAGAGAGGCCTTCAGTGGTTCTTAATTACTCTCCAAATGCTGTCGAGGCTCACCTGGCCATTCAGAGATTGCTGCCTCCATCTGCAAATGGGCTCCCTGCAGACTGCAGCAGACACAGAGCCTTTTGGTCCGTGTGGACCAGACTTTCAGTAACGCAGAGACGGTTTTCTTGTGCTTGCTCTTCAG
Seq C2 exon
GGTGTGATGCAGGGGACTGTGCCCTACCTGGGCACCTTCCTGACTGACCTCACCATGCTAGACACTGCCCTCCAGGACTACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019630:ENSBTAT00000026153:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
NA
C2:
PF0061714=RasGEF=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development