GgaINT0035659 @ galGal3
Intron Retention
Gene
ENSGALG00000004728 | Q5ZIY0_CHICK
Description
NA
Coordinates
chr8:8036657-8038466:+
Coord C1 exon
chr8:8036657-8036746
Coord A exon
chr8:8036747-8038379
Coord C2 exon
chr8:8038380-8038466
Length
1633 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
GCTGCTCTGATCATTTGCAGGGA
3' ss Score
7.83
Exon sequences
Seq C1 exon
GAAGGAACATCCAAATTTGCAAATCTGGACAGCAGTGTGAAAGAAAATCAGAAAAGAACACAGAGACGTCTTCAGCTTCAAAAGGATATG
Seq A exon
GTGCGTCTGGGGCCCTCCTCCCCTTTTTGAGCTGGTAACGTGGTTAAGTCTATCACGATGAATTATGAGAGAAGCAGAAGCTAGAAAGGTATCTAAAAAAGGGGGCGTGCAGGAGGTAATGCTCTTGTGGATGCCTTCTGTCACACAAAAAAATCACTCATGATCAGTGCTATTGATGAGCTGACACCAAGCAAGCAGACCGCGAGGCTTGGACTGAATATGTCACACTGACTGCGTTACATTGTGCTGCTGGGCTGTGCGAGCTGTGGGCTGTGGTGCAAACCAGTTCTCCTTGTACTCCAGTAACACCTGTGTGTGTACTGAGGTGCCAGAGGAAGCAGACCAAGCATCAGCACAGGCAATGTGCTCAGGGATCTGATGCTGAGAACGCCCCATGATGGCAGGATTTGGTGGATGTGTGCAATGTATGCAGGGACCACAGTGTGTTCCCTGGCGCCGACCTTCCCTCGCTCCCTGACGAGATAAATGGGTGCATCGGGCTGCTACTCCTGTCCCCACTTACGTATGTTTCACATCCAAAGCAGCTGTTCAGGATGAACACAGAGCCAAGTGCTTGGCCTGAGTTTCAAGTCTTGCAGAGATGTACTGAGCATGTCGTGTAAAAGAGGGACAAATGAGTGATGTGTATAAACATGTGCTCGTCGCTTTCAGCTGCCTTGTTTCTGCCTCGCAAGCGAGAACCCCATCAATTACTCTTGTTATCCTTTAGAGAGCAACGGGGAGAGCTACACAGTAGTTTCTTAGTAAAATATGTAATGTCAGTACTGGGATTCTTGTGATAAAGAAAATCAGCTCTGGCCAGAGCGGAAATCTCATTTACTTCTAAACAAGCTCGTGAAGCTTCTGCCATACCAGCTCAAAAACTGCACAGAGCCTCACAGAGATTGCTTTGTACAATGCCTGGTTTCCAGTCTGCTGGTGAGAATGGCTTTTGTCTCAAAGTTGGCAAAGATTGAAAAGAACAGGGGAGGACAGATCTGGGATAGGAAGGCAAAACTGCTGAATATGATTTTTTGTTTGTCTTTTAGCTTGCCTGGAAAAAATAGCCATCCTTTTGGATGGGAGGAACAAGCATTTCCTTCATGGGTGTAGGCACGGCCTGAGCCCTACGACTGGTGGCAGTCTAGAAAGTTAAAATTTGAGTGCTAAGTAATTGAAATGCATGGGATGGCAGGGGGAGAAGTTAATTTTTCTTGGAGGAATAATCTGTGACTTGATGTACTCGATTGTCATGTAATACAACAACGTAATCGAGTAAAATCCCACTGGGATGAAGCAGGAAGAGAAACTTCCCACCAGCTAACCAGGATGGCTCCCAGCAGGTAACGGGGGGGCTCTCAGTGCTCCTCCCACAGGTAGGGCTTCCCAGAGACTGTTAGAAATATTGCAGTATAAGGCCACTCCTCAACGTCTGCAAAAGCATCCTGCTTCTCAGTAGGATTCCATTTAAATTCTAGCTGAGATACCAAAGGTGATACGATGAAAGAAAGCCTCAGGGAAAAGACTGACGTTTGGCTAAGCAGGCTGCTTTTATTTCTTCTTTTAGTAGTGTTTGAGCATTCCAATAATTACTGTTTCCCAGTCCATCCAACGCTGCTCTGATCATTTGCAG
Seq C2 exon
GGAGTAATGCAAGGCACCGTCCCTTACCTCGGTACCTTTCTCACTGATCTCACCATGCTGGACACAGCCCTTCAGGATTACATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728:ENSGALT00000007530:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
NA
C2:
PF0061714=RasGEF=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]