BtaINT0124457 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17013361-17013609:-
Coord C1 exon
chr7:17013577-17013609
Coord A exon
chr7:17013483-17013576
Coord C2 exon
chr7:17013361-17013482
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCAGAGGCTGCCCCTTCAGGAG
3' ss Score
2.35
Exon sequences
Seq C1 exon
GGGGATCTCATCAACTTTGAGAAGAGGAGAAAG
Seq A exon
GTAAGGGGGAGCTGTGGTGGGCAGGGGTGGAGGTGGGGAGGGGGTCCAGGGTTGGGCAGAGCATGGGCAGAGGTCTCAGAGGCTGCCCCTTCAG
Seq C2 exon
GAGTGGGAGATCCTGGCCCGCATCCAGCAGCTGCAGAGACGCTGTCAGAGCTACTGCCTGAGCCCCCACCCGCCCATCCTGGCCGCCCTGCGTGCCCAGCACAAGCTCAGCGAGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.195
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCAACTTTGAGAAGAGGAGA
R:
CTCCTCGCTGAGCTTGTGC
Band lengths:
145-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]