GgaINT0125405 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7451656-7451991:-
Coord C1 exon
chr17:7451959-7451991
Coord A exon
chr17:7451778-7451958
Coord C2 exon
chr17:7451656-7451777
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACCAGCTCTATTGGCTGCAGGAG
3' ss Score
4.94
Exon sequences
Seq C1 exon
GGAGGGCTGATCAACTTTGAGAAGAGAAGGAAG
Seq A exon
GTGAGAGTTTGCACAGCTGGGTGGCGGGAGGAGGCTGGCGTTGTGCGAGCCCGGGCTCTGCCACTCGTTTTGGGAGGAGATTCTAGTCCTTCGTAGGCGCCTTGGTGCATGGGGCTGGGCTGTTTGCAGAGGGCTGTGGGGCTGCAGACAGAGGGGGCCTGACCAGCTCTATTGGCTGCAG
Seq C2 exon
GAGTTTGAAGTCATTGCCCAGATCAAGCTGCTTCAGTCAGCCTGCAACAACTACAGCTTCACCCAGGAGGACCATTTTGTGGACTGGTTCCACAGTCTGGAGAGGCTCAGTGAGGCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.6=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGCTGATCAACTTTGAGA
R:
TCACTGAGCCTCTCCAGACTG
Band lengths:
146-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]