MmuINT0131344 @ mm9
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28403633-28404025:+
Coord C1 exon
chr2:28403633-28403665
Coord A exon
chr2:28403666-28403903
Coord C2 exon
chr2:28403904-28404025
Length
238 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTATTGTCTTTTGATCCAGGAG
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGGAGACTGATCAACTTTGAAAAGAGAAGGAAG
Seq A exon
GTGAGGAGCTGCCAGCTTCAGGGGGCGGGGGAGGTCGTGGGCTGGGCAAGGCATGTGCGTCCTTGTGTTGCTCTATGGTGATAGTTGGTACACTCTTCAGAGGCTATTCCATAGAAAAGGGTCTTGGGGTGATGACATCCGGGACAGCCTCCTGTGTAAAAAGAGGGAGACGCGTGAGTGGGTGTAAGGCGGCGGTAAAGACACAGAAGCTTCACCACCCTATTGTCTTTTGATCCAG
Seq C2 exon
GAGTTCGAAGTCATTGCCCAGATCAAGTTGCTACAGTCAGCCTGCAACAACTACAGCATTGCTCCGGAAGAACACTTTGGAACATGGTTCCGAGCTATGGAGCGACTCAGTGAGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-Ralgds:NM_001145835:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGACTGATCAACTTTGAAAAGA
R:
GCCTCACTGAGTCGCTCCATA
Band lengths:
149-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: