BtaINT0122013 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103131001-103131486:-
Coord C1 exon
chr11:103131454-103131486
Coord A exon
chr11:103131123-103131453
Coord C2 exon
chr11:103131001-103131122
Length
331 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTCCCTTCTGGCCCGCAGGAA
3' ss Score
10.39
Exon sequences
Seq C1 exon
GGGAGACTGATCAACTTCGAGAAGAGGAGGAAG
Seq A exon
GTGAGCGGCCGCAACATCACGGGAAAGGGGCAGGTGTTGAGGGGGAAGGGAGGTCAGAGTGCCACCTGATTAGAAACCTGGCTCCACCGTCTGCCTTCCTGTTACATTTGGGAGGAGAGTTGGATACAGAAACGGTGGGGGAGCTTCTCCCACCGGAGGGTGGGACAGGAAGTCGAGTCAAGAACAGCTTCGGGGAGGGGGGTTGCTGTTTAACCCCGGCTCTGAGGACAAGGTGGGAAGAGGGGACCCAGAGGCTGTCCCAGGCCCGGCCCCCCACCCCACCCCACCCCGCCCCAGCCGTCAGCATCCTATCCTCCCTTCTGGCCCGCAG
Seq C2 exon
GAATTCGAAGTGATCGCCCAGATCAAGCTGCTCCAGTCAGCCTGCAACAATTACAGCATCACGCCCGAAGAGCACTTCGGGGCCTGGTTCCGGGCCATGGAGAGGCTCAGCGAGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194:ENSBTAT00000032653:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development