RnoINT0123931 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7125256-7125678:+
Coord C1 exon
chr3:7125256-7125288
Coord A exon
chr3:7125289-7125556
Coord C2 exon
chr3:7125557-7125678
Length
268 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTGTTGTCTGTTGATCCAGGAG
3' ss Score
6.4
Exon sequences
Seq C1 exon
GGGAGACTGATCAACTTTGAAAAGAGGAGGAAG
Seq A exon
GTGAGGAGCTGCCGCCCTCAGGGGATGGGGATGGGGACATGGACTGGGCAAGGCACATGTTGATTTATGGTGATATTTGGGACACTCTTCAGAGGCTATTCCATAGGAAGGGAGCTGGGGTGATAACATCCAGGATAGCCTCCTGTGTGCAAGTCCAGACACTGGCTATTTGGACTGTGAAAACAGGGAGGGGCCTGAGTGGGTGTAAGTGGGGAAGTAGATAAAGACCCACATAGGCCCATCACCACGCTGTTGTCTGTTGATCCAG
Seq C2 exon
GAGTTCGAAGTCATCGCCCAGATCAAGTTGCTCCAGTCGGCCTGCAACAACTACAGCATTGTTCCCGAGGAGCACTTTGGAGCCTGGTTCCGAGCCATGGGACGGCTCAGCGAGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATCAACTTTGAAAAGAGGAGGA
R:
CTCGCTGAGCCGTCCCAT
Band lengths:
142-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]