BtaINT0124467 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17017778-17021245:-
Coord C1 exon
chr7:17021031-17021245
Coord A exon
chr7:17017921-17021030
Coord C2 exon
chr7:17017778-17017920
Length
3110 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTAGTCAGTGCTCCCTCAGGAC
3' ss Score
1.83
Exon sequences
Seq C1 exon
GGCTGTGGTGTCAGTGCTGGGCTTATGGCTGCGGGACCACCCTCAGGATTTCTGGGACCCCCCTGCCCACTCGGACCTAGGCAGTGTTTGCAACTTTCTGGGCTGGGCAGCTCCATCAGGGGCTGAGGCCCAGGAGGCTGAAAAGCTGCTGGGAGATTTCCTGAAGGAGGCGAAGACAGAGCAGGAGGAAGAGGAGCAGTGCCAGACACGGGCAG
Seq A exon
GTGAGCGGACTGGGGGCGTGATAGTGTCCTGAGCAGGCATTCTCCTTCCCCCAGGGATATTCTCCCCTCTGGAAGATCTACAGATCTTGGGCAGGGTCCTTAGCCCTGTCTGAGCCTCAGTTTCGCCACCTGTAAAATGGGGATAATAACCCAGTATTGTCATTTATCCCTCACCTCCCCCACTCAACACATGACAGCTATAAAGATATTCTTTCATGGGGTTGGGATATCTTGTGTTTTTGGCTACAAATCATCCTATTGCTACTTGCCTTAAGAGCCACAGAGACCTGGGTTCAAATCCCAGTTCTGCCATTTGCTGACTGTGCGACCTCGAATAAGTCACTTCACCTCTCTGAACCTGTTTCCTTATCTTCAGAATGGGGGCAATGACAGTACTTACCACATTGGCTTCTTCATTCATTCGACAAATAAACTGTGGATAGGAGCTCCCTGTTCCCTGGGGAAGACAATTAGTAGACAAATAAATAAGTAATGAGGGCTTTGCAGGCAGATTCTTTACTGTCTGAGCCACCAGGGAAGCCCAATGAAGGCTTGGCAAATAGTATTATTTTCATTACTGTTGGATGTCAGCAAACTATCTGGCCTTTAATAGAAAAGTTTGCCAAGAATTTCCAGGAGGTCCAGTGGTTAATACATTGCACTTCTGTGCAAAGAGGCAGGTTCAATCCCTGGTCAGGGAACTAAGATCCCACATGCTGAGCTTGCCAACCTCTGTTGTAGAGAGCTTTGGAAGGAAGGAAAAATATCCACATACTTCATTCAAACCTTTGTTCAATTGTCACCTGCTCAGATGTGCATTCTCAGATCTCTTCCCAACAAATAGAGCCTCCCACTCTGAGTCCTCTTACCTGACTTATTATTCTTCATAGAATCCATTGGTCGTGTCCCCAACTCTGTCCCCAGAGTCAGTTACAAGATGGATTTATTTATTGAATAATTGCATCCTGCCTATAAAATATCATCTTTCACCCATCTGTGTTTGATCTGATCCCTATCACAAAAGCTTCATAACCTTAATCCATTCTTTAATCTTTAGACTAATCTGGCCATATTTCTCTCTGCTTTACAAAGTAGCAGCCACTTCTCTCCCCTAGAGACAAAGTTTCAGCTATTTAAATATGTTTTATCCCTTCGGCTTCTCTTTTGGTTACTAAATATCTTTCTTCCTTTGCCTTCAAGATTTTTCCAGCTTATTCCAAGTCATCCAAGCTGCACAGACTAGTGAGGTAGCCACTAGCCCCATGTGGCTATTGAAATTGAAGTTAATTAACATTAAATAAAAATTAGAATCAGTTCTTTGGTCACACTAGCCACATTTCTAGTGCTCAGTAACCACATTGGGCAGCACAGATAGAAAATATTTTCACCACTGCAAAAAAATTCTATTGAAAAGGCTACCCTAAACTGTGAGTATTTGAGATCAGAGAAGAAAAATGAACATTTATTGAATGCCAGCTGTATGCCAGGCTCTGGGAACTTTAACATCTTTATTTGGGGGTTACTTTTTACCATGATTTCAAACACATACAGAAATAGAGAGAAGTAGTGTAAAGAACACTTACACACCCCTCACTCATTTTCAACAATTATCAATTTTAAAATATTTATTTATTTGGCTGCACAGGGTCTTAGTTGTGGCACGCAGAATCTTCAATCTTCCTTGGGGCATGCAAGATATTTAGTTGTGTCAGATGAACTCTTAGTTGAGGCATGTAGGATCTTGTTCTCTGACCAGAGATTGAACACAGACCCCTGCATTGAGAGTGCAGAATCTTAGCCATTGGACCACCAGGGAAGTCCCTCCTATGCTCACTTTTAAAAACTAATATTTTGCAATACCACCTGTCCTAATATTAAATTAAAGACAGATAATCAAATGAACTTAAAAATAATAATATATTGCAATGGTAATAGGAAGGAGAAATAAGACAAAAGCAATTTACACAATGGTGTTGGTATGTCAGTGTCTGGGCATGCCTCATCAGAAGACATAATGAAGTTGTCCAGTGCCTTCACCTGCCGTAGCATCACAGTGAACATGGAAACCACAGACTAATGCAGGGGAGTGCACCAGTGACAAAGATGCTGTAGCAGATGTTAGTGACATCGATTTCCAAAACGGTGAACAGCACGTGCAATTTCCATATAAAACAAAGTCCAAGCTCTTACAGTCCTTGCATTCCTGGAGCCAAAATAATTAGTGTTCAAGAGCAAGACTGGGTTTCCCAGGCAGCTGGATAGTAAAGAATCCGTCTGCCAATTCAGGAGACACAGGTTCAACCCCTGCGTTGGGAAGATACCCTGGAGAAGGAAATGGCAACCCACTCCAATATTCTTGCCTGGGAAATCCCATGGGCAAAAGGAGCCTGGCAGGCTATGGTCCACGGGGTTACAGAAGAGTTGGACACGACTGAGAGACTAAATAGCAACAAGAACAAGATAGTTGGGTTCTAGGTGCAGATTATTGTAAATAGGTTTTTTAAGGACACAAATTTGGAGGGACATTTGGAGGCTGGGTGTTACGATTCTTCACTATGCATGTCTGGATTTCCAAAGTGTCCCCTAGGGGGCGCCACCATTGACCACCCCCCTCCCCCACCACCACCTTGAGAAAAGTAATTCATATTTATTGAGTACTTTATAGAAGTCTGGTATCCGTGATCTCATTTGATTTGTTTTTAATCCATACTTTTGATGCATTAATAATGAATTAATGTTTTCACACTTGGACACTGAAAAAATAAATCCAGATGAGGAAACTAAGGCACAGAGAGGTTAAAGGCTTGTTTTAATTCACACAGCTAGCCCAGTGGATCAATTTGGATTCGAACTTGGGACATTAAGACAATGTCTTAACCTTCCCTTAACCACAAGGTTGGGCTTTCCTGGTGGCGCAGTGGTAAAGACTCTGCCTGCCAATGCAGGAGATGTAAGAGACAAGGGTTCGATCCCTGGGTGGGGAACATCTCGTGAAGAAGGGAATGGCTGCCCACTCCAGTATTCTTTCCTGGAGAATCCCATGGACAGAGGAGCTTGGTGGCCTACCGTCAGACTGAGCATTTAAGCTCACCTAGTCAGTGCTCCCTCAG
Seq C2 exon
GACCCCCTGGGACTGCCCAGATCCTCTGCCCAGACTCCCCGATGGGCTGCCTGGAAGACGAGGAGGGCCTCGTGTGGGAAGGCCCTGAGCTTCTGGACTTCAGTGTAGACGACGTGGCGGAGCAGCTGACCCTTATGGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(29.9=43.8)
A:
NA
C2:
PF0061714=RasGEF=PU(7.5=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]