RnoINT0126484 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22994041-22998742:-
Coord C1 exon
chr8:22998528-22998742
Coord A exon
chr8:22994181-22998527
Coord C2 exon
chr8:22994041-22994180
Length
4347 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CAATTGTATCTATTTCTCAGGCC
3' ss Score
6.63
Exon sequences
Seq C1 exon
GGCTGTAGTTTCGGTACTGGGATCTTGGCTGCGAGATCATCCTCAGGACTTCCGGGATCCCCCTGATCATCAGAACCTGGGTGATGTCCGAATCTTTCTGGGCTGGGCAGCCCCAGGAGGGGCAGAAGTCAGGGAAGCAGAGAAACTTCTAGAAGATTTCTTGAAGGAGGCTAAGGAAGAGCAGACAGAGGGGGAGCAGCGACTGGCTTGGGCAG
Seq A exon
GTAAGGAGCGATCAAGGCCGGTGATATTCCGAGACAATACTACCTACTCAGCTCCAAATGACAGGCCCTGAAGACATTTTATTTATTTAGTTTAGTGCTTGGAAATGAACCTTTGTGCATTCTAGGCAAACACTATACCCCTGAGTCACCCCAGCTCTTGAAGAAAACTCTCTTCCCTTCATCCTTTAGTTTGTTGGTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGGTCTATGTATGTGTTCATGTGTGTGGGTGCACATGCACACATGTGTACATGAATGTGGAAGTCAGAGAATGATGCTAGGTGTCTTCCTCTATTGCTGTCTCTTACCTCTGGAGACAAGGTCTCTTCTTGATCCTGGAACTCACCCATTTGGTGAGACTGGCTGGCCGTTGAGCCTCCAGCTTCACAGAGTTTGACTTGCAAATGTTAAACTGTGCCCAGCTGTTTGTGGGTGTTGGGGATCTGAACTCAGGTCCTCACACTTGCATGGGCAAACATGTAACCCACCGAGCCATTTCTCTAGCCCCATAGATGAGCCTTATTTTCTCCACTTGATCACACCTTTAGCCAAAGAATTAGCAGTTGCCTAGTGTCCTCCTGCATGCAGAGATCCTCTGTTCTCTGATTTGGAATGTCACTTAGAGACCTAATGCTTGCCTAGCCAAGAATGGCAACCTGGGTTCAAATCCCAGGCCTGCTGTTTGTTGGTTACTTTGCCTCTCAGAGACCAGTTCCCTTAAATGGGAGTGGTCGTGTGTCTGCTTCTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGTGTGTCTGCTTCTTAACCATTGGAGTTGAACCACTAGCTCCGGCCTCCAAATGGTGGGCTAGGGTTCCCACCCTCCTGGAAATCTAACTAAGTCAGTGAGCAGTAAGGGCTGGCCAAGTGTGTTGGCATTTTAATTTGTATTTATTGTTACTGTGTATGTGACACAGGTATGTGGATTCTTGCTTGCCAGAGAAGGTCTTGGAATCTGTTCTCTCTCTCCTTCTACCTTTATATGAGTTCCATGTTTTTAATGACTGGCCCATTGGACCAATCTTATTATTTTATTAAGTGTTGTTTTTATTTTTCAAGACAGGCTCTCATGTAGCGCAGGCTGGCCTCAATTTGTAGCCAAAGATAACCTTGAACTTTGATCTTCCTGCCTCTACCTCCCCAGGGCTAGGGTTACAAGCTCCACCATACCTGGTATTACTTTTGCTACTATTGCAGCTTTTGTTGTTACTTTGTTTTTAATTGATTTGTTTGTTTATACTTCGTGTGTTTGAGGCGTTTTCCTGCTTTAAGTGCACGATGTGCTTGTAGTGCCAGCCAGTAGTGGGGCAAAAGAAGACATTGGATCCCCTGGACCTGGCATTACACACAGCTATAGTCATTATTTTGTTTTATTTATTTTCTTATTTTTTCTCAATAATATATTTTTTATTCACTTTACATCCCGATTACAAACCCTTCTCCTAGTCCCGCCTTTACAAATTCCTCTCCCCACTACCCCACTCACCTTGTTCTTAGAGAAGGGGAAGGCCCCCAACCCCCGCCTTGGGTACCACCCTACCCTGGGGCAGCTAGTCCCAGCAGGACTAAGCAAAAAAGCCCAGGTGGGAGAAGGGGATCCAATGGCAGGCAACAGAGTCAGAGACAGCCCCTGCTCCAGTTGTTAGGGGACCACATGAAGACCAAGCTGCACATCTGCTACAAATGTGTAGGGGGCCTAGGTCCAGTTTGTTTTATTTTTTGAGACAGGGTCTTGCTATGGACCTCATGTTGACCACACCTCTAAGAGGATGACCTTGAACAAATGTGTGGTTTGTGCAGTGCAAGGGACTGAACTCAGGGTCTCCTCCATGCTAGGCAAGCACTCTACGCACTGAGCTATGCCCCAGCTCCTGAGGGCTGGGGTTAAAGATGTGCACCACCACCCAGCTGTTTCCCGTTTTGTTTTTTCTTTTTAATGTTTGTTTGCTTGTGATGCTGGGGGATGGAACCTGCCTAGCCCTGCACAATCCAGGCAAATTTCCCCTTAAATTTAACTTTTTACATATCTACCAGGTGTAGTGGAGTATATGCCAAAATGCCATATTAATACCGTGTTATAGGTACCAAGGTGCCTCAAACTCTAAAATAGGAAGATTTGATTGTAAGCTAGAGGCTAGCCTGTTCTACACAGTGAACTCCTTTGATTGTAAGCTAGAGGCTAGCCTGTTCTACACAGTGAACTCCTTTGATTGTAAGCTAGAGGCTAGCCTGTTCTACACAGTGAACTCCAGGCCACCAGGACTACATGATGACACCCTGTCTGAAAATAAAGTTGAGGATAGAAAAAAATATTTACAAACCCCATTTGAAGTGTCACTTTTGGGGCTGGTAAGAGAGCTTGACAGAAAGGGGTTTGCTGACAATTCTGGTAGTCTGAGTTTGATGTCTGGATCGCATAATGAAAGGAAAGGACAGACTCTTGACATTTGCGTACACACAAAGGACAAGTGCAGTTTTATTCATTCAGGTATTTATTTATTTATCTATTTATCTATTTAGGGGGCATACTATAGCTCCATGTGCTAATAAGCCATCTCAATAAACCTAAATAAAGTTCTAGATTTTTTTTGCTGGGGGGGGGGGCGGTGTTTTGTTTCGTCTCGAGACAGTGTCTCACTGTGGCGCTCTAGCTGGCCTGGAACTTGATATGTGGTGCAAACTGGAACTGAACTCAAGATAGCTGCCTTCCTCTGCTTCCTAAGTGCTGGGATTAAAGGCAACATACCAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGGCTGGAGAGATGGCTCAGTGGTTAAGATCACTGTCTGCTCTTCCAGAGGTCCCGAGTTCAATTCCCAGCAACCACAGGGTGGCTCCTGACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGATAGTGTACTCATATAAACAGAAAGAAATTACATATCAAAAAATTAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGGGAGAAAGGCCACTTCTCTTCAAAGTGACTCTCACACCCTGAGCCTCTGAGGCTGCTTTATTTTTCTGCACATCATTCATGGTTGATTCCTGGCTTTCATGCATCCTGTGAGCGCAGGAACCAAGGCTCCTATGGGCTTTGTCCCCAGAAGTCAGGACAATTTGGATTAGCTAACTGACTGGTTAGTTGCTACAGTCCACCCCCCTCCCAAGCCTTGATGTTGATCTCATCCTGATCTGAATCTGTGTCCCTAAATCCTTTGTTTATCCTTTAATCCTGAGCCTAAGTGGCCCAAGTGGCTGTGCTCTTCCCTGCAGCCCACCCACTTAGCTCCGCCTGCTGACAAAGTCTTTTCTCTCCTTAATTGATTACCAAGAAGTTTCCTTTTCCTGCCATCATTTTAAATCTTTTGTATGGGGGGCTCCTTCACCTCACAGTGTGTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATCAGAAGACAACTCTCTGGATTTTTTTTCTCCCCTTTGACAGTAATCTCCTTTAACCACTGAGCCATCTCACCAGCAACCACCCCTCCTCCCACTGCCTCCCCTCCAACCCCACCCCCAACCCCTTAGACAGGGTCTCACTCTGTAGCTCAGACTAGTCAGAAACTCACTGTGTAGCTGAGGCTGGCTTCGAACTCATGGCAATCTTTCTGCTAAATGTCCTCTCCACAAAGTCTCCCAAGTGCCGGGATCAAAGACCGGCCTCAACACACCTGGATAAATTTGGAAGTTTTTTCTCTTTCTTCCTTCTATATTTCCCTTCTCTCCATTTACTTTGCATATGTGTATGAGTGTTTTGCCTGTGCATATGTCAGCACATCCCATGTATGTATGATGCCCAGAGAGACCACAGGGAGCATTGGATTCCCTGAGACTAGAAGCGTAGACTGTGGTTAGCTGCCACGTGTGTTCTGGGAATCTAACCCAAGCCTTCGGAAGAGCAGTGGAGTGCTCCATACCGCTGAGCCATCCTTTTCAACTGCAAAGTGAGTTTGAAACAATTGTATCTATTTCTCAG
Seq C2 exon
GCCCTCCCTGGGCTGCCCAGTCTCCCAGATCAGAGTTTGCAGAGGATTACTCGGAAGAGGAAGGCCTCAGGTCAGAAGGCCCAGAGCTCCTGGACTTTAGCGTGGATGAAGTGGCGGAGCAGCTGACTCTTATGGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.266
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(29.4=43.8)
A:
NA
C2:
PF0061714=RasGEF=PU(8.0=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]