BtaINT0124471 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17014000-17016011:-
Coord C1 exon
chr7:17015921-17016011
Coord A exon
chr7:17014054-17015920
Coord C2 exon
chr7:17014000-17014053
Length
1867 bp
Sequences
Splice sites
5' ss Seq
CAGATGGGT
5' ss Score
0.38
3' ss Seq
AAGTCTCTCACTGTTTCCAGGAG
3' ss Score
6.98
Exon sequences
Seq C1 exon
GGAACCATTATCCACTTTCAGGAAACTTGCCCAAATTTTCTCCGATGAGAACAACCATCTGAGCAGCAGAGAGATTCTCTCCCAGGTACAG
Seq A exon
ATGGGTGAGGGCCCCCACAGATCCCAGGCCCAGGAAAGGGCCATTGCTTTTCGTTGTCATAACACTCAGCGTCCTTTCCCATACCTCTCGAGAATGGCCTTCCTCCTGTTTGTAGGCAGCCCTGTGTTTTTGCTGCCTCTGCTGCCCTCATCAGAGCTCACACTTGACGGCTACCTTATTTACTCATTCAACAAATACCAGAAGCTACAGTGAAAAGGTCACAGAAGGTCAGAGTCACAGCAAAGAGTGGGAAAAAAAAATTGTGCCAAGGACTTGACTTTGATAAGCAAAACAAAACAAACAAAAAAAGTGTGCCAATGAGTCTGACTTACTGCAGGCAAGATTGAGGTTCTGACTGCAATTAGGTGCTGGTTCTTGGGGGTGAATCCAGAATAGAGACTTCCCTGGTGGTCCAGTGGTTAAGACTCTGAGTTCCTGATGCAGGGGACATGGGTTCGATTCCTGGTCGGGGAACTAAGATCACACATACTGCAGCACAGTCAAAAAAATGCAGAATAGATGGCACTGGAAGTCTGTTCTTTTGCCAAGAACGTTCTTCCCACCCTCTGCAGGTGTCTCCCCCAGTGTTTCCACCTCTGAGAGGCCCTCCCTATATCCCCCACACCTCCACTCTACCCCCATTGCCCTTATCTCTGCCTGTCCTTAGATTACACACCTAACTTGGTTGTTGCTGTTTCGCCATGGCTAATGTCTGCTCTATGAGGCCAGAAATTTTGTCTGTTTTGTTCACTGCTGCCTCCCCAGCACTCCAAACAGTGCCTGGCCCAGAGTAGGTGATCAGTAAATAAATGAACACAGGTCTCAAATAAGGATGAGAGCTCAAGGAACTCTGCGTTAAGTGCCAGGCAGTTGCCAGGAGGCTCAGCCACGAAGACACAAACACACTTTCCTCCCCTTGGAGGGCTTCAGGCCCCAGATGGGTCACACACAATTTAGTAATTGCCCCAGCAATTATATCACTAATTACCAGGCAGAACAATGCTGTGAAGGCAAAGTTCAGGGCATTGCTTGGGAGGGGTCACAAGGACTCTCACCTGTGTTATAGGCCAGCCTTGGAGTCCTCGGCATCCACAAGCCCCATCTCTCATCATCCCCTGTAGGGCCTGCCCCCTGCTGCTTATCTGCTCTCTCCTCCTCCCTGTTCACTTTCCCTTGGGTATGGCTGTGATGGAGATATCTTCCCTGAGGGAGGGGTCAAAAAGACCCCAAGACTGCTCAGTCCTTCTCCTCCCCCTCAGTTAGTTCAGTCACTCAGTCACGTCCAACTCTTTGTGACCCCATGGACTGCAACACGCCAGGCTTCCCTGTCCATCACCAACTCCCAGAGCTTGCTCAAACTCATGTCCATCGAATCAGTGATGCCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTGCCTTCAATCTTCCCCAGCACCAGGGTCTTTTCTAATGAGTCAGTTCTTAGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATTGACTGGTTTGATCTCCCTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCTAACACCACAGTTAAAAAGCATCAGTTCTTTGGCGCTCAGCTTTCTTTATGGGCCAACTCTAACATCCATATATGACTACTGGAAAAACCACAGCTTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTTGTCATAGCTTTTCTTCCAAGGAGCAAGCGTCTTTTCATTTCATGGCTACAGTCACCATCTGCAGTGATTTTGGAGCCTAAGAAAATAAAGTCTCTCACTGTTTCCAG
Seq C2 exon
GAGGCAACTCAAGGGCCCCAAGAAGGGGATGCCCCCACAGGAAGCCCGTCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.2=100)
A:
NA
C2:
PF0061714=RasGEF=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]