HsaINT0139897 @ hg38
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11402650-11405231:-
Coord C1 exon
chr19:11405147-11405231
Coord A exon
chr19:11402707-11405146
Coord C2 exon
chr19:11402650-11402706
Length
2440 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CAGTTTTTCTCTTCCCTCAGGAG
3' ss Score
8.96
Exon sequences
Seq C1 exon
GGAACCGCTATCTACTTTCAGGAAACTTTCGCAGATTTTCTCCGATGAGAACAACCACCTCAGCAGCAGAGAGATTCTTTTCCAG
Seq A exon
GTAGAGATGGATGCAGACTCCAGGGATTTTAGGCCCGGGAAGTCGGGGGAGGGACTTGGGGCCAGGCAGGGGTAATCTCCCTGCTATAGTCAGGACACTCTGTCCTTCCCTACCGCTCAGCAATGACCTTATCCTTGTCCCTGGCGGGTTGCACGTTTTTCTTTCCTCTACTTCCTGCGTTATAGTTGACTGTCAGTGACTGCCCTATTTATTCACTCAGCAAAACACAAGAAGTCACAAAGAAAAGGTTACTTAAGGCCAGAGTCATAGCACAGGGTGGGAACAAAAAAAATGTTCTGAGGACTTTACCTTGATAAGCAAAACTAAAAAATGTGTGTCAAAAGTCTGGCTTATTTATAGGCAAGATTTAGATTCTCATTGCAATCAGGCGCTGGTTTTTAGAGTGAATCTAGAATGGATCCCTGGGCCTGGAACATTCTCCACCCCTCCAGGTTTGCATGCAACTTGCTCACTCACCTCCTTCTGGTCTCTGATTAAATGTCCCTGCCTCTGAGAGGCCTTCCCAGCCTCCATCATCCCCAAAACCACACATCTGGTTTTTTGTTGTTGTTGTTGTTGTCGTCATCATTTGTTTTTTTGTTTCTTTGTTTGTTTGTATTGAGACAGAGTCTCGCTCTGTCACCCAGACTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCACCTCCCAGGATCAAGCAATTCTCTCTGCCTCAGCCTCCCATGTAGCTGGGATTACAGGCACCCACCACGACGCTTGGCTAATTTTTGTATTTGGTAGAGACGGGGTTTTGCCGTGTTGGCCAGGCTGGTCTCGAATCCCTGACCTGAGGTGATCCACCTGCCTTGGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCACTCCCAGCCAAATTTCACCTGGCTAACAGAGTGAAACCCTGTTTTCCTGCCCAGCACCTAGAACAGCACGTGAGCTGGGCTCAGTGACTCACGCCTATAATCCCAACACTTTGGGAGGCCAAGGTGAGAGGATCACTTGAGCCCAGGAGTTCAAGACCAACCTGGGCAACATGGCAAAACCCCATCTCTGCAAAAAATACAACAATTAGCTGGGCGTTTGTGGTGCACGTCTGTAGTCCCAGCTATTCAGGAGGCTGAGGAGGGAGGATCGCTTGAACTTGGGCGGTCAAGCCTTCAGTGAGCCAAGATCAGGCCACTGCACTCCAGCCTGAGTGACAAAGTGAGACTCCATCTCAAAATAAAATGAAATAAAAAGTAAGTAAACAACAGCAAATTCAGGATACCCAGGAGATCCCTGGCAGGCCTGTGCCATCCAGCTGCGGACAAGGATTCTCTCCTTGTTAAGGCCAGCCCTGGGGGCCACTACCCACAAGCCCCACCTCTCATGGGGCCTGCTCCCTGCTGTTTATCTCCTCCCTACCCTCATCCAAGGTGGTCTGGCTTCTAGAGTGGGCCTTAACCCCTGGCTTCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGGTCTTGTTGCCCAAGCTGGAGTGCAATGGTGCGATCTTGGCTCACTCCAACCTCCGCCTCCCGGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGAAATATGCTACCATGCCCAGCTAGTTTTTTATATTCTTAGTAGAAACAGAGTTTCACTCTGTTAGCCAGGCTGGTCTCAAACTCCTTACCTCATGTGATCCACCAGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGTCCAGCCCTTTCTTAAAAAAAATTTTTTTGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCCAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGAGGTGGGGGGCGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGACACTCCCTCTAGAGTGCAGCCTCTGCTTCTCAGGTTCAAGCTATCCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGTGAGCCACCATACCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTGGCCAGGGTGGTCTGGAACTCCTGACCTCACATGATCTGCTCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCGCACCTGGCCTACCACTGACTTTTGATTACTCAAAGCATGAAGGGTATATATGATGGGTCTGCAGGCATCGTTCCTGAGGAATTGTCCAAGGAGACCCCAGACCTGGCTCAGTTTTTCTCTTCCCTCAG
Seq C2 exon
GAGGAGGCCACTGAGGGATCCCAAGAAGAGGACAACACCCCAGGCAGCCTGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517:ENST00000380456:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(15.1=64.7)
A:
NA
C2:
PF0061714=RasGEF=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development